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Detailed information on CNT30524888


BLAST search results

BLAST vs Swiss-Prot:
sp|P30078|CHSY_MALDO, E-value = 6e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597791Phaseolus vulgarisFraxinus excelsior19.7925.088475forward
CNT3030385Phaseolus vulgarisTheobroma cacao26.9125.5688.24102forward
CNT3022855Phaseolus vulgarisPopulus trichocarpa23.4812.8485.3989forward

Expression of CNT30524888

Peptides detected in this lncRNA

>peptide 1 (59 aa)
PIITKHISSGLHLFRFQTQLLLNLVQNCRSTRVCNPEDGVVIRDVQWVEGLKKCLSNVL*

>peptide 2 (35 aa)
MVCAVQTNSNKGFSICGIGSEPTITAAAPSPNNACP

Sequence

>CNT30524888
TCCCATAATCACTAAGCACATCTCTAGTGGCCTTCATCTTTTCAGGTTTCAGACCCAACTTTTGCTCAACTTGGTCCAGAATTGCAGGTCCACCAGGGTG
TGCAATCCAGAAGATGGAGTTGTAATCAGAGATGTTCAATGGGTTGAAGGCCTCAAAAAGTGCCTTTCCAATGTTCTTTGAGACAATCCCAGGAACATCC
TTAAGGAGGTGAAACGTGAGTCCAACTTCACGAAGGTGACCATCAATAGCACCATCACTGTCTGGAGCAATGGTCTGTGCAGTCCAAACCAACTCAAACA
AAGGCTTCTCAATCTGTGGAATTGGGTCAGAACCAACAATCACTGCAGCTGCTCCATCTCCAAACAATGCCTGTCCCAC