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Detailed information on CNT30524797


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 4e-58

BLAST vs NONCODE:
NONGMAT001209, E-value = 2e-80

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Phaseolus vulgarisIpomoea triloba24.3947.2286.47170forward
CNT30393023Phaseolus vulgarisTriticum turgidum17.6528.1584.55123forward
CNT30552975Phaseolus vulgarisOryza glaberrima17.6521.2186.99123forward
CNT30135940Phaseolus vulgarisLolium perenne16.2121.2484.96113forward
CNT30706772Phaseolus vulgarisPrunus avium23.5346.7284.76164forward
CNT30579749Phaseolus vulgarisEchinochloa crusgalli21.0923.9884.35147forward

Expression of CNT30524797

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MAAPEKAPPNKMLAPTMKPMAMGAMVPKLPLLGSMAVA*

>peptide 2 (73 aa)
MLAPTETATKRPNAWAMEAEMRPAGVAAPLSVSLLKMRVEMNSARPAFNVSGLVASSGLPMAMFLIGIFNQRR*

>peptide 3 (99 aa)
LVDKPSKTTTDERANPVDPVVGPGPANNGGPECDCRVHGCSGEGPTQQNVSANDETNGDGCDGSQTTSLGVNGGSVDSVNQTEGHHDLQHQSVTHSNSS*

Sequence

>CNT30524797
CTCGTAGATAAGCCCAGCAAGACCACCACCGATGAGAGGGCCAACCCAGTAGATCCAGTTGTTGGTCCAGGTCCAGCTAACAACGGCGGGCCCGAATGTG
ACTGCAGGGTTCATGGCTGCTCCGGAGAAGGCCCCACCCAACAAAATGTTAGCGCCAACGATGAAACCAATGGCGATGGGTGCGATGGTTCCCAAACTAC
CTCTCTTGGGGTCAATGGCGGTAGCGTAGACAGTGTAAACCAAACCGAAGGTCATCACGATCTCCAACACCAAAGCGTTACCCACTCCAACTCCAGCTGA
GAGTCCAAATGCGGGAACAGAGGAGGGAGGCCACCACGGAGCCAAGGAGCTGGGCGATGATGTAGACGACACCGCGGAGAAAGGTGATGTTGCCTCCGAT
GAAGGCGCCGAAGGTGACGGCGGGGTTCACGTGACCTCCGGAGATGTTGGCGCCGACGGAGACGGCGACAAAAAGGCCGAATGCGTGGGCGATGGAGGCG
GAGATGAGACCGGCAGGTGTGGCGGCGCCGTTGTCGGTAAGCTTGTTGAAGATGAGGGTGGAGATGAACTCAGCCAGACCCGCCTTCAATGTGTCGGGGT
TAGTGGCCTCCTCGGGCCTTCCGATGGCGATGTTTCTGATCGGCATCTTCAATCAACGGCGGTGATGATTACGACTGGTGAAAGATCAGGTGAATAC