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Detailed information on CNT30524728


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 3e-98

BLAST vs NONCODE:
NONMTRT000178, E-value = 9e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522345Phaseolus vulgarisSetaria italica46.8533.7380.24253forward
CNT30530404Phaseolus vulgarisEucalyptus grandis62.5995.2181.36338forward
CNT30316147Phaseolus vulgarisCorylus avellana78.1556.6480.81422forward
CNT30703138Phaseolus vulgarisQuercus lobata73.5275.7682.12397forward
CNT30499549Phaseolus vulgarisCoffea canephora55.3761.0280.94299forward
CNT30615836Phaseolus vulgarisSesamum indicum22.0431.0784.87119forward
CNT30277485Phaseolus vulgarisChenopodium quinoa74.4447.1379.6402forward
CNT3021247Phaseolus vulgarisCitrullus lanatus74.8143.8781.68404forward
CNT30729539Phaseolus vulgarisCorchorus capsularis70.9356.9984.33383forward
CNT3068683Phaseolus vulgarisQuercus suber7582.3282.72405forward
CNT30486152Phaseolus vulgarisOlea europaea48.1528.7382.69260forward
CNT30506399Phaseolus vulgarisNicotiana attenuata46.4875.8380.88251forward
CNT30637312Phaseolus vulgarisCapsicum annuum55.9370.2378.81302forward
CNT3091042Phaseolus vulgarisSolanum tuberosum36.6754.2581.31198forward
CNT30182233Phaseolus vulgarisSecale cereale59.8151.9380.19323forward
CNT30289293Phaseolus vulgarisTriticum aestivum25.3745.0783.21137forward
CNT30223417Phaseolus vulgarisHordeum vulgare38.5291.6382.21208forward
CNT3084565Phaseolus vulgarisVigna radiata10031.9592.04540forward
CNT30539234Phaseolus vulgarisBrassica napus74.4443.9380.6402forward
CNT30510868Phaseolus vulgarisSolanum lycopersicum35.3791.8380.63191forward
CNT30143836Phaseolus vulgarisMedicago truncatula8074.181.94432forward
CNT30244810Phaseolus vulgarisAvena sativa59.2639.679.06320forward
CNT30261302Phaseolus vulgarisBrassica rapa73.776.9880.4398forward
CNT30447453Phaseolus vulgarisSaccharum spontaneum46.8544.1580.24253forward
CNT30131528Phaseolus vulgarisLolium perenne47.5955.7580.93257forward
CNT3066796Phaseolus vulgarisLeersia perrieri59.8183.0379.57323forward
CNT30653881Phaseolus vulgarisRosa chinensis62.5931.6584.91338forward
CNT30718631Phaseolus vulgarisMalus domestica golden56.6753.3182.03306forward
CNT30343308Phaseolus vulgarisEragrostis tef42.2283.2183.77228forward
CNT30477892Phaseolus vulgarisArabidopsis halleri70.3735.5181.58380forward
CNT30363710Phaseolus vulgarisSorghum bicolor20.9319.2582.3113forward
CNT30595456Phaseolus vulgarisOryza meridionalis59.8156.6779.57323forward
CNT30360575Phaseolus vulgarisLactuca sativa58.1552.0781.21314forward
CNT30424172Phaseolus vulgarisPapaver somniferum59.4445.9980.06321forward
CNT30570592Phaseolus vulgarisVitis vinifera43.1572.1482.4233forward
CNT30645151Phaseolus vulgarisCannabis sativa42.0423.8281.5227forward
CNT3054595Phaseolus vulgarisAmborella trichopoda29.2676.3381.65158forward
CNT30105598Phaseolus vulgarisOryza longistaminata47.5937.378.99257forward
CNT30325711Phaseolus vulgarisAsparagus officinalis37.2263.0181.09201forward
CNT30574680Phaseolus vulgarisOryza barthii47.5928.0680.16257forward
CNT30579496Phaseolus vulgarisEchinochloa crusgalli46.8564.7181.42253forward
CNT30497454Phaseolus vulgarisDigitaria exilis59.8186.8380.19323forward
CNT30115589Phaseolus vulgarisOryza nivara47.5918.0180.16257forward
CNT30594668Phaseolus vulgarisEragrostis curvula45.9373.5980.24248forward
CNT30604168Phaseolus vulgarisOryza punctata22.4143.8485.95121forward
CNT30174824Phaseolus vulgarisVigna angularis38.72279.9209forward
CNT30550386Phaseolus vulgarisOryza brachyantha22.414482.64121forward
CNT30336663Phaseolus vulgarisCynara cardunculus33.738.9783.52182forward
CNT30726386Phaseolus vulgarisLupinus angustifolius61.1136.7184.24330forward
CNT3064271Phaseolus vulgarisSelaginella moellendorffii41.1140.3680.63222forward
CNT3050773Phaseolus vulgarisCucumis sativus41.339.6879.82223forward

Expression of CNT30524728

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MDRGGRASKMVDLVDFQEERLDDVVSEKFEIRIPKMVHHVFFPPCEEIVHHNHAVSPANQPIH*

Sequence

>CNT30524728
ACCAATGGGATTGACGTTGCCCCAATAAGTCTCCTTCTGAGGGTGCTGCAGAGGATCTCCATAAACCTCGCTGGTACTGGTTAACAAGAACCTGGCGCCA
ATTCTTTTAGCCAGCCCCAACATGTTCAACGTGCCCACCACGTTGGATATGATAGTCTTGACGGGATTGAACTTGTAATGGACAGGGGAGGCAGGGCAAG
CAAGATGGTAGATCTGGTCGACTTCCAAGAGGAGAGGCTCGACGACGTCGTGTCGGAGAAGTTCGAAATTCGGATTCCCAAAATGGTGCATCACGTTTTC
TTTCCTCCCTGTGAAGAAATTGTCCACCACAATCACGCTGTCTCCCCGGCTAATCAACCGATCCACTAAGTGTGACCCGACGAACCCGGCCCCGCCCGTC
ACCACAACCCGGAGCCCCTTCCGTTTAATCCCTAGGGGGATCTTCCCCACGGAATGCACCGCCACGTCATAGCTTCGGGTGTTGGTGGTGGGCCAGAGCG
TTAAGTCGTCGCGGGCCAAGAAAGAAGCGGGGAATGGGTC