Detailed information on CNT3052469


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640181Amborella trichopodaNymphaea colorata37.0944.1280.84214forward
CNT30564426Amborella trichopodaActinidia chinensis30.3312.1680.57175forward
CNT30679064Amborella trichopodaTriticum urartu24.7815.2881.12143forward
CNT30704805Amborella trichopodaPrunus avium30.566.9279.55176forward
CNT30497116Amborella trichopodaDigitaria exilis24.7814.5284.62143forward

Expression of CNT3052469

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSSRRMRERRKWPRWLVPTLSSKPSAVKVGSFAVGR*

>peptide 2 (40 aa)
ESWFSKEAESLFQLQYTPDLLRLGSLTTCASLLPASSSET*

>peptide 3 (54 aa)
KAGSRRRRNLCSSSNTPQICSDLDRSPLVPVSCLPLPQRHSPWLCTSGRGGKEA*

>peptide 4 (54 aa)
MVGPHAQLEAFCSKSGFLCGGQVDSRIADQHIKRPPRPLEIVDKLPHTVERGKVQ

>peptide 5 (80 aa)
KLVLEGGGIFVPAPIHPRFAQTWIAHHLCQSLACLFLRDIALGYVLLEGGEKKPEKRDVLPEEAGDACFLMVATVELLHR*

Sequence

>CNT3052469
GAAAGCTGGTTCTCGAAGGAGGCGGAATCTTTGTTCCAGCTCCAATACACCCCAGATTTGCTCAGACTTGGATCGCTCACCACTTGTGCCAGTCTCTTGC
CTGCCTCTTCCTCAGAGACATAGCCCTTGGTTATGTACTTCTGGAAGGGGGGGAAAAGAAGCCTGAAAAGAGGGATGTGCTCCCTGAAGAGGCCGGTGAT
GCCTGTTTCCTCATGGTAGCGACGGTGGAACTCCTGCATCGTTAGCATGTTGCACACCTTGCTGTCTTTATAAGCTTTGGCACCGTCAAAGTCTCCACCA
TCAATCATAGGCGAGGTGTTAGTGCCATTCAGACCCGCAGATAGTCCCCGCAGGGTAGTCAGATTTCTGCATGTCTTCGAGAAGGATGCGGGAGAGGAGG
AAGTGGCCCAGATGGTTGGTCCCCACGCTCAGCTCGAAGCCTTCTGCAGTAAAAGTGGGTTCCTTTGCGGTGGGCAGGTAGACAGCCGCATTGCAGACCA
GCACATCAAGCGGCCTCCCAGACCTCTTGAAATTGTCGACAAACTGCCTCACACTGTCGAGAGAGGCAAGGTCCAGG