Detailed information on CNT30524665


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004583, E-value = 8e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020382Setaria italicaCitrullus lanatus19.123.8587.39119forward
CNT30198677Setaria italicaPisum sativum16.5329.3486.41103forward
CNT30284073Setaria italicaTriticum aestivum42.388.3991.29264forward
CNT30221733Setaria italicaHordeum vulgare27.2953.892.94170reverse complement
CNT30555990Setaria italicaOryza glaberrima98.8839.2688.8616forward
CNT30436372Setaria italicaAegilops tauschii33.7131.292.86210forward
CNT3010052Setaria italicaZea mays34.0385.4896.23212forward
CNT30208139Setaria italicaHelianthus annuus14.2926.2586.5289forward
CNT30688963Setaria italicaTriticum urartu41.8964.1390.04261forward
CNT30366171Setaria italicaSorghum bicolor96.1554.9587.15599reverse complement
CNT30369387Setaria italicaOryza glumipatula41.7361.1888.08260forward
CNT30116714Setaria italicaOryza nivara56.545.7189.2352forward

Expression of CNT30524665

Peptides detected in this lncRNA

>peptide 1 (42 aa)
HNINRSFSSLVTLPMAIVIVILLFITSTISEHLILLPGHTIV*

>peptide 2 (37 aa)
MPFFMVSKIEILHFYLWGHNQGCGKSTNFIQFIFLTL*

Sequence

>CNT30524665
CCATAATATCAATAGATCATTTTCTTCTTTAGTAACTCTACCAATGGCTATAGTCATAGTGATCCTCCTATTCATTACTTCAACCATTTCCGAGCACCTC
ATATTACTTCCAGGGCATACGATAGTTTGATTATCTGTGGACGATTTCTTTCTCGTTCAATGCCCTTTTTCATGGTCTCGAAGATAGAAATTTTGCATTT
TTATCTATGGGGTCACAACCAAGGTTGTGGTAAATCCACGAATTTTATTCAATTTATTTTTCTTACACTATAGAAATAAAGAAATAAACATTTGAATTCA
GCATTATTCCATGATTCCTATTTCAAAGCCTCTCTTTTAAGGGAACAATAACCCCTCTTTTCTCATTCGCTCTCTATTGCATGGGTGGAAGAACAAAAAT
AGGATTCTGAAAAAAAGAAAGATATTGAAAAGCAAAATTGACTTTTGAAACCCTTTTTATGTGTAACGGAAAAGAGTTGCGATTTCTTCTTATTCCTATA
GAACGTCTAGTAACAAGAATATGAAATCGTAAATAGCGAAAAATTCTTGCCTTGCGCGATCTAAGTCTAAGGAAATACAAAAAATCCGCTTATACACCAA
TTTCATCCACATCGAATTTATAT