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Detailed information on CNT30524663


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675387Setaria italicaSetaria viridis70.62101.2393.43411forward
CNT30641615Setaria italicaNymphaea colorata75.9579.7890.5442forward
CNT30549212Setaria italicaIpomoea triloba10019.2988.14582forward
CNT30270599Setaria italicaChenopodium quinoa62.222.2488.95362forward
CNT30730494Setaria italicaCorchorus capsularis77.6651.3689.82452forward
CNT30195089Setaria italicaPisum sativum35.2211.894.15205reverse complement
CNT30294119Setaria italicaTriticum aestivum39.1883.5297.81228reverse complement
CNT30220801Setaria italicaHordeum vulgare63.0694.5999.18367forward
CNT30396824Setaria italicaTriticum turgidum72.1641.7198.57420reverse complement
CNT30569398Setaria italicaActinidia chinensis77.6623.1390.93452forward
CNT30511593Setaria italicaSolanum lycopersicum23.5421.0489.05137forward
CNT30552690Setaria italicaOryza glaberrima77.3229.3998.67450forward
CNT30442196Setaria italicaAegilops tauschii66.1545.499.48385reverse complement
CNT30660220Setaria italicaTriticum dicoccoides51.0387.6198.99297reverse complement
CNT30215429Setaria italicaHelianthus annuus62.7151.8591.78365forward
CNT30720843Setaria italicaTriticum spelta36.9410099.07215forward
CNT30347837Setaria italicaEragrostis tef77.3258.3798.44450reverse complement
CNT30363261Setaria italicaSorghum bicolor73.8833.7899.77430forward
CNT30620564Setaria italicaCajanus cajan77.848.7589.4453reverse complement
CNT30596724Setaria italicaOryza meridionalis93.4722.4997.43544reverse complement
CNT30410880Setaria italicaPapaver somniferum77.6649.8990.93452forward
CNT30642274Setaria italicaCannabis sativa70.9650.5584.5413reverse complement
CNT3036965Setaria italicaCucumis melo77.6662.0990.49452forward
CNT30331560Setaria italicaDioscorea rotundata30.2434.8595.45176forward
CNT30104374Setaria italicaOryza rufipogon77.3233.8998.22450reverse complement
CNT30497700Setaria italicaDigitaria exilis53.9557.496.5314reverse complement
CNT30604015Setaria italicaOryza punctata35.0542.2499.51204reverse complement
CNT30174498Setaria italicaVigna angularis68.2178.6188.66397forward
CNT30551087Setaria italicaOryza brachyantha40.2178.5299.15234reverse complement
CNT30115272Setaria italicaEutrema salsugineum23.5428.1989.05137forward

Expression of CNT30524663

Peptides detected in this lncRNA

>peptide 1 (47 aa)
RVISGVGVRALRGPFPSTRGPGRTHLWCTSYRAYGKRWVAKCGEDNC*

>peptide 2 (36 aa)
MSALSSDFPRASGSTAETATGSPPIRGWSDRSMEIG*

>peptide 3 (42 aa)
MKKPKKSSALPLYLSKRWKGRVLWCPFQLRIGASQLLANISLM

Sequence

>CNT30524663
TCGGGTCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCC
TACGGTAAACGCTGGGTAGCCAAGTGTGGAGAGGATAACTGCTGAAAGCATATAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCTCCTCCGACTTCCC
TAGAGCCTCCGGTAGCACAGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCGACAGAAGTATGGAAATAGGATAAGGTAGCGGCGAGACG
AGCCGTTTAAATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACGATTTGAACCTTGTTCCTACACGACCTGATCA
AATCGATCAGGCACTTGCCATCTATCTTCATTGTTCAACTCTTTGATGAAAAGATGAAAAAACCAAAAAAAAGCTCTGCCCTCCCTCTCTATTTATCCAA
GAGATGGAAGGGCAGAGTCCTTTGGTGTCCCTTCCAGTTAAGAATTGGGGCTTCACAATTACTAGCCAATATTTCTCTCATG