CANTATAdb - search

Detailed information on CNT30524662

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT005543, E-value = 5e-106

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674625	Setaria italica	Setaria viridis	32.63	92.96	98.86	264	reverse complement
CNT30309146	Setaria italica	Triticum aestivum	57.85	61.42	98.08	468	forward
CNT30623039	Setaria italica	Daucus carota	32.26	99.62	94.25	261	reverse complement
CNT3039583	Setaria italica	Marchantia polymorpha	30.16	60.25	93.44	244	reverse complement

Expression of CNT30524662

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MSNASVGERSALEGSKRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

>peptide 2 (36 aa)
LPFSSTLDGIALTLMARFKRGKACGGYLGTQRRGRA*

Sequence

>CNT30524662
CTTCCATTTAGTAGCACCTTAGATGGCATAGCCTTAACGTTAATGGCGAGGTTCAAAAGAGGAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAG
GAAGGGCGTAGCAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTGAACTGCTGCTGAATCCAT
GAGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCA
GCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAGCGTTGTGCTGCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCGCGGTACCAAATCGAGGC
AAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAGCTTCATCGTCGAGAGGGAAACAGCCCGGA
TCACCAGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAAACGCGAAAGCGGGGGTCGACG
AAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGG
TGAGTCAGGGCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTCAATATTCCTGTACTACCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGG
TTAGCCGAA