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Detailed information on CNT30524653


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Setaria italicaOryza sativa66.5325.4496.61797reverse complement
CNT30678383Setaria italicaSetaria viridis17.2860.5396.62207forward
CNT30548882Setaria italicaIpomoea triloba26.8812.2299.38322forward
CNT30632593Setaria italicaVigna unguiculata27.319.3798.17327forward
CNT30504983Setaria italicaNicotiana attenuata26.7917.6399.38321forward
CNT30309155Setaria italicaTriticum aestivum43.7423.6499.62524reverse complement
CNT30221870Setaria italicaHordeum vulgare69.8767.5598.92837forward
CNT30400948Setaria italicaTriticum turgidum43.7420.9699.81524reverse complement
CNT30585815Setaria italicaMusa acuminata27.0513.3598.46324forward
CNT30234810Setaria italicaBrassica oleracea27.343.294.5327reverse complement
CNT30553404Setaria italicaOryza glaberrima38.1532.3794.75457forward
CNT30147395Setaria italicaMedicago truncatula27.057.6399.07324reverse complement
CNT30248040Setaria italicaAvena sativa42.1537.5298.61505reverse complement
CNT30662061Setaria italicaTriticum dicoccoides42.6526.6399.8511reverse complement
CNT30143344Setaria italicaLolium perenne62.2733.3598.79746reverse complement
CNT3016633Setaria italicaZea mays45.6628.6298.35547reverse complement
CNT30229838Setaria italicaAnanas comosus12.4433.6399.33149reverse complement
CNT30218527Setaria italicaKalanchoe fedtschenkoi27.321.9699.39327reverse complement
CNT30655385Setaria italicaRosa chinensis26.8813.6798.76322forward
CNT30203595Setaria italicaHelianthus annuus26.8817.5898.45322forward
CNT30689128Setaria italicaTriticum urartu43.7428.1999.24524forward
CNT30721611Setaria italicaTriticum spelta14.5237.74100174reverse complement
CNT30369805Setaria italicaOryza glumipatula24.1220.1596.54289forward
CNT30154718Setaria italicaPrunus persica27.3847.3397.26328forward
CNT30418817Setaria italicaPapaver somniferum8.648.5895.15103forward
CNT30147862Setaria italicaBrachypodium distachyon12.0254.75100144reverse complement
CNT30102660Setaria italicaOryza rufipogon7.1822.9988.3786forward
CNT30576076Setaria italicaOryza barthii66.5317.7396.61797forward
CNT30582488Setaria italicaEchinochloa crusgalli45.1644.56100541forward
CNT30116696Setaria italicaOryza nivara66.5320.196.86797reverse complement
CNT30604605Setaria italicaOryza punctata7.1837.2391.8686reverse complement

Expression of CNT30524653

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*

>peptide 2 (30 aa)
PGSRQNSKHVRIYLEARFLLVNAFHPIDDS*

>peptide 3 (31 aa)
MFSSRPGSPGSTTVRPNHSQNLSLILAQKER*

>peptide 4 (35 aa)
MQVERCFRGAGQKEKRLLAKVVSPCFKTTGRALRL*

>peptide 5 (36 aa)
MRSTLLMTANVTKSLDEERASERRLVGFGCWRGLSC*

>peptide 6 (57 aa)
MKKELLSEGLLALVVGVDYLVKLCRDGEREERTLPSKQRKTALKWICWSMMTKQATD*

Sequence

>CNT30524653
CCTGGATCCAGACAAAACTCCAAACATGTAAGAATCTACCTTGAAGCAAGGTTTCTACTGGTTAATGCGTTCCACCCTATTGATGACAGCTAATGTTACT
AAAAGCTTAGATGAAGAAAGAGCTTCTGAGCGAAGGCTTGTTGGCTTTGGTTGTTGGCGTGGATTATCTTGTTAAGCTCTGCAGAGATGGTGAGCGTGAA
GAAAGGACACTACCATCAAAGCAAAGAAAGACAGCTCTCAAATGGATTTGCTGGTCTATGATGACCAAACAAGCAACGGATTGAGCAACTAGCGCGAAAG
CCGTTGCGCTAACGCGCATCCGTTTTCTTGCTCCGTTCCACATAGGTGAGAGCCTAGTCTTGCATAGGCGCAAGCTCTTCTCAAAAGAATTTCGTTTATA
GGATTCCGTCGTCCGTTTGTTTTGTTTTGAATTGACATAGAGAAATCTTTCTCGCGTTCCCTTAATTCAGGAATAGGTGGCGAAGGCTACTTGTTCCTTG
GCGGACTATATATAAAGGAAAGGGGTTATTTTTCCTTTACGGCAATAAGAGTTGATTCCCTTGCTTGTAGTTTTTGATCGATTCCGTGTATTTAACATAT
TTAAGAGTGGTTAGGAGAGAGAATCAATGTTTAGTAGTAGGCCCGGTTCACCAGGTTCTACCACTGTTCGGCCCAATCATAGTCAAAATCTGAGTTTGAT
CCTGGCTCAGAAGGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGTT
GTCTCGCCCTGCTTCAAAACTACAGGGCGCGCGCTACGGCTTTGACCTAACGGCCTCCGTTTGCTGGAATCGGAATAGTTGAGAACAAAGTGGCGAACGG
GTGCGTAACGCGTGGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAAGAAAGCTCAAAAGCGCTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTC
AGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAG
TGGGGAATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGA