« Back to Setaria italica search


Detailed information on CNT30524649


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 2e-13

BLAST vs NONCODE:
NONSLYT003133, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Setaria italicaOryza sativa14.62100.2198.55482forward
CNT30671914Setaria italicaSetaria viridis41.8182.8699.351378forward
CNT30641383Setaria italicaNymphaea colorata36.013896.121187forward
CNT30550219Setaria italicaIpomoea triloba36.2627.5298.741195forward
CNT30702366Setaria italicaQuercus lobata29.8898.998.17985reverse complement
CNT30378673Setaria italicaArabidopsis thaliana15.8141.7897.7521reverse complement
CNT30619000Setaria italicaSesamum indicum30.2232.693.57996forward
CNT30283003Setaria italicaChenopodium quinoa24.0382.9398.11792reverse complement
CNT30730481Setaria italicaCorchorus capsularis35.9896.4293.681186reverse complement
CNT30632346Setaria italicaVigna unguiculata36.2642.7298.241195forward
CNT30490123Setaria italicaOlea europaea15.9630.2197.15526forward
CNT30505560Setaria italicaNicotiana attenuata36.1353.8797.91191reverse complement
CNT30712870Setaria italicaGlycine max13.1426.0595.61433forward
CNT30157603Setaria italicaPistacia vera22.678.0990.6745forward
CNT30185187Setaria italicaSecale cereale51.9448.498.771712forward
CNT30299935Setaria italicaTriticum aestivum51.9478.0398.831712forward
CNT30223648Setaria italicaHordeum vulgare51.9472.0895.331712forward
CNT30387090Setaria italicaTriticum turgidum51.9460.8498.831712forward
CNT30569655Setaria italicaActinidia chinensis36.3533.6497.581198forward
CNT30543268Setaria italicaBrassica napus36.0751.8195.291189forward
CNT30554477Setaria italicaOryza glaberrima11.7753.6797.94388reverse complement
CNT30147396Setaria italicaMedicago truncatula36.2640.1797.991195forward
CNT30435868Setaria italicaAegilops tauschii42.1799.7199.281390forward
CNT30242786Setaria italicaAvena sativa25.7998.1599.53850forward
CNT30670388Setaria italicaTriticum dicoccoides51.9461.0698.421712forward
CNT30140120Setaria italicaLolium perenne51.8551.4699.411709forward
CNT3017956Setaria italicaZea mays52.749.2597.241737forward
CNT30605146Setaria italicaGossypium raimondii28.7962.1597.79949reverse complement
CNT30216578Setaria italicaKalanchoe fedtschenkoi36.2635.8898.491195forward
CNT30655407Setaria italicaRosa chinensis36.2935.7897.911196forward
CNT30207637Setaria italicaHelianthus annuus32.5554.8693.571073forward
CNT30628241Setaria italicaDaucus carota36.2644.2698.741195reverse complement
CNT30688989Setaria italicaTriticum urartu30.9851.9199.021021forward
CNT30721631Setaria italicaTriticum spelta51.9449.2998.711712forward
CNT30346087Setaria italicaEragrostis tef18.659.2899.84613forward
CNT30360996Setaria italicaLactuca sativa32.5273.4794.311072forward
CNT30429739Setaria italicaPapaver somniferum36.0436.9394.281188forward
CNT30571858Setaria italicaVitis vinifera36.2634.4898.661195reverse complement
CNT3057903Setaria italicaAmborella trichopoda34.8347.9191.991148reverse complement
CNT30108930Setaria italicaOryza longistaminata42.6960.1399.861407forward
CNT3038324Setaria italicaCucumis melo36.0462.9997.91188reverse complement
CNT30499372Setaria italicaDigitaria exilis63.9962.0599.862109forward
CNT30603680Setaria italicaOryza punctata64.0553.4898.962111forward
CNT30557400Setaria italicaPanicum hallii18.9945.6397.6626forward

Expression of CNT30524649

Peptides detected in this lncRNA

>peptide 1 (97 aa)
MSAKAVALPYTRIRFLAPSRVSTITRSRFLAGADTDRLSKKTLKWANTRPSGRTCRLRLRAPADTFRSTFTCEPKSSCRTPSFLISVLAFFIFRRGL*

>peptide 2 (45 aa)
MMEKPASSKRRLCCRSAPYGVVQSQQPFWGASIGNTGLMTGWGAQ*

>peptide 3 (89 aa)
MIGPRVFKTPLPLALLSLIFTVESSKPSTNSEGLGWPGRPTLLALPKAKLSSLATSKRRAKTFSFEARDERESRCASVHAHTFSCSVAR*

>peptide 4 (33 aa)
MMSMARGRALNGLGWPPFRFTNPRETPNTGRHP*

>peptide 5 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRNPRKGCRPMGTRK*

>peptide 6 (31 aa)
MSTHHILGLKKVPRVRLSPMKVVRELGLETS*

Sequence

>CNT30524649
ACATCTGAGTAGCTAAAGGAAGGAAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGAACAAGGGTTTTCATCAAAAGAAATCCGAAGCGGT
TTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCAGCAAGCGTAGGCTGTGTTGCCGTAGCGCGCCCTACGGAGTTGTACAAAGTCAGC
AACCGTTTTGGGGCGCAAGCATAGGCAACACAGGACTGATGACGGGGTGGGGCGCGCAGTGAACTGGTTTTCTAAAAAGATTGGAAGATCCGGCCAAAGA
AGGTGATAGCCCTGTTCATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATGATGATCGCTTTTACGCGAGAAAGGGGGACCAC
CCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCCAATCGGGGAGTGCAATAGAGAACCTGAGA
TCCGATGCGAACAATCAGTCGAAGGAGCGGAGCGCGGGCGCACTCACTCTAACGGCGTACCTTTCGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGC
TTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTTACGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAG
CTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGGATATAGCTGGT
TTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCTTTACCAACCCCAG
GGAAACTCCGAATACAGGCCGTCATCCTTAGTACAGACAGACTGATTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGT
CCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTTGAAGAAAGCGTAATAGCTCA
CTGGTCTAGCTCCATGGCACCGAAAATGTCTCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAGTAGCGGGAC
GTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAAATCCTGTGAAAAACACGATCG
CCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAG
TGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGTCGGAGCGAATTGGATGATCGGGCCGAGGGTTTTTAAAACCCCTCTTCCCCTCGCTCTCCT
TTCCTTAATATTCACCGTCGAGTCATCAAAGCCGTCAACTAATTCAGAGGGGCTCGGCTGGCCCGGTCGCCCTACGCTACTGGCGCTTCCAAAGGCGAAG
CTCTCGTCTTTGGCGACCAGCAAACGGAGGGCTAAAACCTTTAGTTTTGAAGCAAGGGATGAGCGCGAAAGCCGTTGCGCTTCCGTACACGCGCATACGT
TTTCTTGCTCCGTCGCGCGTTAGTACAATAACGCGCAGCCGTTTTCTTGCTGGGGCGGACACGGATCGACTCTCTAAGAAGACTCTGAAGTGGGCGAACA
CTCGGCCCAGCGGGCGAACATGCCGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCGAAGCACTTTCACGTGTGAACCGAAGTCGTCTTGCCGAACTCC
TTCCTTTCTCATTTCAGTCCTCGCCTTTTTCATCTTCCGTAGGGGCCTTTAGTCTTTTGATTAGAGTAGAGGTCGCGAGAGAGCAGAGCGTACCGCCCTG
CCATAGTCGCGAGGATCTTAATAGTCGGTCGCGACTGTTGTCATAGTCAACGACGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTC
CCGGTGAACAAGTAGAGTATACTAGGGCGCGTCGAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTA
TCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACC
TGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTGATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAAGTAGCGAAAT
TCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGA
GTACCAACGGCTAGACGGTAAGACCCCGTGCACCTTGACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGGGAGGTGGTGACACAC
AACGACCAATCCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCCGCACCGATCATTCGGGGGGGGCGGGACACTGCGAGGTGGGTAGTTTATCT
GGGGCGGATGCCTCCTAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCGTTGATTCTGCTCGTGAGCGTAATGGTATAAGCCTGCCTGACTGTGAG
ACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAGTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATAACA
GGCTGATGACTCCCAAGAGCTCTTATCGACGGAGTCGTTTGGCACCTCGATGTCGACTCATCACATCCTGGGGTTGAAGAAGGTCCCAAGGGTTCGGTTG
TCGCCGATGAAAGTGGTACGTGAGTTGGGTTTAGAAACGTCGTGAGACAGTTCGGTTCCTATCTACCGTTGGTGTTAAAGGGAGAACTGCGAGGAGCCAA
CCCTAGTACGAGAGGACTGGGTTGGGTCAACCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTGCTGCG
CCGCGGGAAATCCTTCTCTATACAAGTTCTCGTACGAGGTTTTTGAACAGAACTTCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGAT