Detailed information on CNT30524614


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30227197Setaria italicaHordeum vulgare23.9725.3585.45110forward
CNT30241118Setaria italicaAvena sativa20.9213.9588.5496reverse complement

Expression of CNT30524614

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLDTTHTSAQMHDTHIVETNRWTSTRGRPIW*

>peptide 2 (37 aa)
VSIKLLRPETIHKHIRLFMTHITVDSVYVLITSSERN*

Sequence

>CNT30524614
ATGTTTCAATAAAATTGCTAAGGCCAGAGACAATACATAAACATATTAGACTGTTCATGACACATATCACGGTGGACAGTGTCTATGTCCTTATTACAAG
CAGCGAGAGGAATTAAATATGCTTGACACCACACACACGAGCGCACAGATGCACGACACACATATAGTTGAGACCAACAGATGGACCTCGACTAGAGGTC
GCCCCATATGGTGAACAATTTATTGGAGATAAACATGAACATAACTTGGCCATAGCTTGAAGCATAGCAACATATGCCTATGAATGGCATTCATGCTGGT
AGCAATGCAATCATATCGTTTTAGGCCTGTCCAGCTTCTTCCATCTTAGCAAGCACTGCCATTTCTTCCATCTTAGCAGCAACTGTCAAATTGAGATATG
GAAATCCCATTAGCGCATGAGTTAATTTTGCAGTGGAAATAGAGTACAAGATGTCTTCA