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Detailed information on CNT30524578


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43766|NLTP3_HORVU, E-value = 5e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697881Setaria italicaOryza sativa18.7127.0887.1878forward
CNT30677319Setaria italicaSetaria viridis65.4710099.63273forward
CNT30555884Setaria italicaOryza glaberrima16.0720.3686.5767forward
CNT30440524Setaria italicaAegilops tauschii21.111.5388.6488forward
CNT30367194Setaria italicaSorghum bicolor16.5529.1195.6569forward
CNT30578372Setaria italicaOryza barthii26.388.0588.18110forward
CNT30593112Setaria italicaEragrostis curvula15.8322.2292.4266forward

Expression of CNT30524578

Peptides detected in this lncRNA

>peptide 1 (78 aa)
RWMVNGASTYLLQSVDMLMGNGTETPHLPGMPATVPMLSFLMLPARLLRLRTPPQQPEGIALAFPVAYGMHGASDDAT*

Sequence

>CNT30524578
ATAGGTGGATGGTGAATGGAGCGAGTACGTACTTGTTGCAGTCGGTGGACATGCTGATGGGGAATGGCACGGAGACGCCGCACTTGCCGGGGATGCCGGC
GACGGTGCCCATGTTGAGCTTCTTGATGCTGCCGGCGAGGCTCTTGAGGCTGCGCACGCCGCCGCAGCAACCCGAGGGCATCGCCTTGGCGTTCCCCGTC
GCGTACGGGATGCACGGCGCCAGCGACGACGCCACCTGACCGCAGGTGATCGCCGCCGACGACGACGCCACCAGCGCCGCCGCCGCGAACACCATGGCCA
GGGCGAACACCGCCTGCATCTTCCTCATCGGAGCCATTGTGTTATACAATCGGTCGCGTGTGCTAATAAGCTGCTAACCAACTGCTAGCTCGATCGATGA
GTGTGGATGGCTGTGGG