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Detailed information on CNT30524561


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 4e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677435Setaria italicaSetaria viridis36.3110099.76423reverse complement
CNT30639598Setaria italicaNymphaea colorata11.9323.2880.58139forward
CNT30533654Setaria italicaEucalyptus grandis10.5625.182.93123forward
CNT30549812Setaria italicaIpomoea triloba12.1926.6483.1142forward
CNT30514302Setaria italicaJuglans regia11.0722.5987.6129forward
CNT30275526Setaria italicaChenopodium quinoa11.7624.8281.75137forward
CNT30180424Setaria italicaSecale cereale12.8823.1888.67150forward
CNT30221624Setaria italicaHordeum vulgare12.8822.1288150forward
CNT30386243Setaria italicaTriticum turgidum15.112685.8176forward
CNT30249706Setaria italicaAvena sativa12.8823.1588.67150forward
CNT30470142Setaria italicaSaccharum spontaneum42.4966.1885.05495forward
CNT30135597Setaria italicaLolium perenne15.1134.0485.8176forward
CNT307034Setaria italicaZea mays13.9120.5395.06162forward
CNT30624138Setaria italicaDaucus carota12.126.4582.98141forward
CNT30346089Setaria italicaEragrostis tef11.7624.3895.62137forward
CNT30597257Setaria italicaOryza meridionalis14.8534.6787.86173forward
CNT30371492Setaria italicaOryza glumipatula14.8532.2287.28173forward
CNT3053146Setaria italicaAmborella trichopoda11.6721.5982.35136forward
CNT30108688Setaria italicaOryza longistaminata14.8530.8487.86173forward
CNT30104475Setaria italicaOryza rufipogon14.8530.7887.86173forward
CNT30578401Setaria italicaOryza barthii14.8530.9587.86173forward
CNT30581754Setaria italicaEchinochloa crusgalli40.3461.4491.06470forward
CNT30118085Setaria italicaOryza nivara14.8532.487.86173forward

Expression of CNT30524561

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MESEVFKLCSSNHDLICFVSPNFAGLLSFSAMLCSM*

>peptide 2 (60 aa)
LRSPHTPSSHKRSPERRRDETLACGGGGGEGEDDLRRELAPLPLLSQPEGRRRQEENGGA*

>peptide 3 (46 aa)
MIYDVNSPLFRSFLSQKGGADKRKMEEHKPKEQRPKANENKPVMNE*

>peptide 4 (39 aa)
MNLLILINPSLANIYCYNTLSNHELIRLNRSRRLASTYVM

>peptide 5 (41 aa)
MIDNFSAAPPDIAVVVGTELWGATMFMPAFPPPLPLPSNFI*

Sequence

>CNT30524561
CTCCGTAGCCCGCACACCCCTTCATCACACAAGCGCTCGCCGGAGAGGAGAAGGGACGAAACCCTAGCTTGTGGCGGCGGCGGCGGAGAAGGAGAAGATG
ATTTACGACGTGAACTCGCCCCTCTTCCGCTCCTTTCTCAGCCAGAAGGGCGGCGCCGACAAGAGGAAAATGGAGGAGCATAAACCAAAGGAACAGAGGC
CCAAGGCCAACGAGAACAAGCCTGTGATGAACGAATGAAAATATCCAGAAGCTCCATTCATTAGACCCGTGGCGAATCTCAATGTGTGTTTGCTCTGTTT
AGCTTTAACCCAACGCCTCCTATAATCTTAGCCATGTCCTAGTTTCCTCTTATAGTCTTAATCGCTACGGTTGAACATGGTGACAGTGCAACGGACATGA
AACTTGAACTACCTATGGGACTATGATCAATTGGAGACACCCATGATTGACAACTTTTCAGCAGCGCCTCCTGATATTGCCGTTGTGGTTGGTACAGAAT
TGTGGGGCGCCACCATGTTCATGCCTGCTTTTCCACCTCCCCTGCCTCTACCCTCCAACTTTATATAGTATCTAGAGTCAGGAAGGTGTAAAAGTGGTTC
TTAGGCCGGATCTTCAGCCCGTTGCATTGCATGGAATCCGAAGTCTTCAAATTATGTTCATCGAATCATGATCTGATTTGTTTTGTCTCCCCTAATTTCG
CGGGGTTGCTGTCGTTTTCGGCGATGTTGTGTAGCATGTGAATCTGACGGTGCGGTGGATCCCTTGTGTGGTTGTCTGTAGCTGTATATACTGTTTGTTG
GGTTGGGTTGACGTTTGCTTTGATCTTACCTGGTTGGTACTATTGTTCGTACAAGCAAAGGTGAACAGAACAGCTGGGCTGTTATGTGAAAACCGAGAGC
TACCCACCGACGAGTTGATTTAGGGGGCGTTTGGTACTTTGCTTATTTTTAGCACGTGTCACGTCAAATATTTAGATACTAATTAGGAGTATTAAACGTA
GGCTATTTACAAAATCTATTACACAGATGGAGGCTAAACGGCGAGATGAATCTATTAATCCTAATTAATCCATCATTAGCAAATATTTACTGTTACAACA
CATTGTCAAATCATGAGCTAATTAGGCTTAATAGGTCTCGTCGTTTAGCCTCCACTTATGTAATG