« Back to Setaria italica search


Detailed information on CNT30524453


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 5e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317005Setaria italicaCorylus avellana20.9954.6481.05153forward
CNT302540Setaria italicaZea mays24.9725.8992.86182forward
CNT30353508Setaria italicaEragrostis tef3835.292.78277forward
CNT30581942Setaria italicaEchinochloa crusgalli24.4238.2896.07178forward
CNT30498473Setaria italicaDigitaria exilis21.437.1492.95156forward

Expression of CNT30524453

Peptides detected in this lncRNA

>peptide 1 (32 aa)
SDQLSSMSQAQILTVISDIQIRDRNEMVSCPS*

>peptide 2 (59 aa)
MTVSRLLPKGSLRCLASRPFLISFTLRMAAWSGSLARPNGSNGPPGWSLSSRSSPLMIR*

Sequence

>CNT30524453
GAGCGATCAATTAAGTAGCATGTCTCAGGCACAAATTCTAACAGTCATATCAGATATTCAGATCAGAGATCGGAACGAAATGGTTTCTTGCCCCTCTTGA
TAATTTACACGCATGGCACATTCATCGGACCCTCACACACACATTGTTTCCGGGTAAGATCAAACGCAGCAGCAGCCTCTCACAGGCTGGGCGTCCTCTC
GGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGCGAGCCGGCCGTTCTTGATCTCCTTCACCTTGAGGATGGCG
GCCTGGTCGGGGTCGCTGGCCAGGCCCAATGGGTCGAACGGGCCGCCCGGGTGGAGCTTGTCCTCCAGGTCCAGCCCGTTGATGATCCGGTAGTACTCGG
CGCCGCCGACGAGGACGACCTCGGCGATGACGGCAACCACCAGGTTGATGGGGATGCTGTTGCCGAAGTAGCTGAGGGTGTTGCCGTCCAGGAGCAGGGC
GCCGGTCTGCATTGTATTACGGTGGCGCCGCCATTAGTTCACAGTTCAGAATTTCAGTTTCAGAGATTGCAATTGCAACTATTCTACCACTGAAATGTGT
GGTCTTTGTGAAACAATGTTGAGTTCTTTTCTTTTTTCATAAATTCAATTGCGCGCGATTGTCCGGCACATTTGGGGAAGAGATTGCTACTCAAGTATGA
AGATTCTTAAAGGTGGTGATCAGGACCTT