CANTATAdb - search

Detailed information on CNT30524429

BLAST search results

BLAST vs Swiss-Prot:
sp|Q43194|NLTP2_SORBI, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677018	Setaria italica	Setaria viridis	29.65	53.17	98.01	201	forward
CNT30117815	Setaria italica	Oryza nivara	32.89	64.64	80.27	223	forward

Expression of CNT30524429

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MDRMCSTSCLGRMCFALLVRRECWSLNRVSIDLALCVVCER*

>peptide 2 (62 aa)
MIDRGVNYLEQSVEVLMEYGMLTPHLDGMLAARLSAVVLAAELRLLTPLQQPAEGAEPWPRA*

>peptide 3 (30 aa)
MAELTWPQLMAASEAAAASSTAATTASTTT*

Sequence

>CNT30524429
GATCCGGCGGTCGTTTAGCTCACCCTGCAGCATGAAGCAAGAATCAGTATATGCATTTCATGCATGCAGTGATTAATTTAATTACGTGCTGGTTGAAGCA
AAATTAAAGTCGAAGATATGGATGATTGATCGAGGTGTTAATTACCTGGAGCAGTCGGTGGAGGTGCTGATGGAGTATGGGATGCTGACGCCGCACTTGG
ATGGGATGCTGGCGGCGCGCCTGTCGGCGGTGGTCCTGGCGGCGGAGTTGAGGCTCCTGACGCCGTTGCAGCAGCCGGCGGAGGGGGCGGAGCCCTGGCC
GCGGGCGTAAGGGAGGCACTGGCCGATGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCTCGGAGGCCGCCGCGGCGAGCAGCACCGCGGCCACGACG
GCGAGCACCACCACCTGAGCGCGAGCCATGCTGATGTGCGTGTTCCTGTGCTAGCTGCTAGCTGCGCTGTGGTCGATGGATCGGATGTGCTCTACAAGCT
GCTTGGGAAGAATGTGCTTTGCTTTGCTGGTGAGGAGGGAATGTTGGTCTTTAAATAGGGTCTCGATCGACCTAGCTCTCTGTGTGGTTTGTGAGCGATG
ACTGACGAGGACGGAGACGGGGAGCTGCTAGCTGATGGGTGCATGCATGGCCATGCCCATGGTGTGTTGCAGTCGTCG