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Detailed information on CNT30524410


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697405Setaria italicaOryza sativa27.2446.9290.14213forward
CNT30677012Setaria italicaSetaria viridis61.5168.2399.17481forward
CNT30184672Setaria italicaSecale cereale17.5241.5287.59137forward
CNT30295002Setaria italicaTriticum aestivum31.3347.4889.39245forward
CNT30390869Setaria italicaTriticum turgidum20.8434.6888.96163forward
CNT30555388Setaria italicaOryza glaberrima17.2626.7994.07135forward
CNT30438779Setaria italicaAegilops tauschii24.5530.4386.98192forward
CNT30249379Setaria italicaAvena sativa21.7442.8288.24170forward
CNT30662842Setaria italicaTriticum dicoccoides25.1935.2487.31197forward
CNT30465769Setaria italicaSaccharum spontaneum36.3249.3994.72284forward
CNT30137065Setaria italicaLolium perenne26.3445.0890.29206forward
CNT30597113Setaria italicaOryza meridionalis27.6228.883.33216forward
CNT30371307Setaria italicaOryza glumipatula32.7423.6483.98256forward
CNT30104243Setaria italicaOryza rufipogon22.5132.5988.64176forward
CNT30578126Setaria italicaOryza barthii32.7430.491.8256forward
CNT30498372Setaria italicaDigitaria exilis27.3745.0595.79214forward
CNT30558778Setaria italicaPanicum hallii20.7241.0191.98162forward
CNT3039554Setaria italicaMarchantia polymorpha20.7244.2685.8162forward

Expression of CNT30524410

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MTVSRLLPKGSLRCLARFSTGPSPVTYAWMKKANMENMASRPFLISFTLRMAAWSGSLARPNGSNGPPGWSLSSRSSPLMIR*

Sequence

>CNT30524410
TCTACAGTTATGTGCAGATTTCAAAAGTTCAGCTTGGAAGTTGGAATCTTAAACGAGCGATCAATTAAGTAGCATGTCTCAGGCACAAATTCTAACAGTC
ATATCAGATATTCAGATCAGAGATCGGAACGAAATGGTTTCTTGCCCCTCTTGATAATTTACACGCATGGCACATTCATCGGACCCTCACACACACATTG
TTTCCGGGTAAGATCAAACGCAGCAGCAGCCTCTCACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCG
CTGAGGTGCTTGGCGAGGTTCTCGACGGGGCCCTCGCCGGTGACGTACGCCTGGATGAAGAAGGCGAACATGGAGAACATGGCGAGCCGGCCGTTCTTGA
TCTCCTTCACCTTGAGGATGGCGGCCTGGTCGGGGTCGCTGGCCAGGCCCAATGGGTCGAACGGGCCGCCCGGGTGGAGCTTGTCCTCCAGGTCCAGCCC
GTTGATGATCCGGTAGAGCAGGGCGCCGGTCTGCATTGTATTACGGTGGCGCCGCCATTAGTTCACAGTTCAGAATTTCAGTTTCAGAGATTGCAATTGC
AACTATTCTACCACTGAAATGTGTGGTCTTTGTGAAACAATGTTGAGTTCTTTTCTTTTTTCATAAATTCAATTGCGCGCGATTGTCCGGCACATTTGGG
GAAGAGATTGCTACTCAAGTATGAAGATTCTTAAAGGTGGTGATCAGGACCTTGAACCAGACGGCCTCAGGGCCACAGTTGG