Detailed information on CNT30524398


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694984Setaria italicaOryza sativa66.3256.3981.64512forward
CNT30677148Setaria italicaSetaria viridis24.619596.32190forward
CNT30348730Setaria italicaEragrostis tef17.6255.5194.85136reverse complement

Expression of CNT30524398

Peptides detected in this lncRNA

>peptide 1 (67 aa)
MHGRPHIRIGPRYATKLVCTYNKLNALNRVSLVNLPGSDGRQSGRQALSQNMSGAPVEVQVEQSCFA*

>peptide 2 (46 aa)
PYYKQREELTMLVTTHTRAQMHDIHIVETNDGSTRGRPIWRTIYWR*

>peptide 3 (38 aa)
MPEVVRWEVRSTNYFNRNAWKATHTYWSTICYKACMYI*

>peptide 4 (29 aa)
MTRHMITIKAVVLFPSIASCCCYLPWLPS*

>peptide 5 (30 aa)
MPMNGIHAIVLVLSSFRRSSNCQIEIWKSH*

Sequence

>CNT30524398
GTCCTTATTACAAGCAGCGAGAGGAATTAACTATGCTTGTCACCACACACACGCGCGCACAGATGCACGACATACATATAGTTGAGACCAACGATGGATC
AACTAGAGGTCGCCCCATATGGCGAACAATTTATTGGAGATAAACATTAATATAACTTGGCCATAGCTTGAAGCATAGCAACATATGCCTATGAATGGCA
TTCATGCTATCGTTTTAGTGTTGTCCTCCTTCCGTCGTAGCAGCAACTGTCAAATTGAGATATGGAAATCCCATTAGCGCATGAGTTAATTTTGCAGTGG
AAATAGAGTACAAGATGTCTTCATGATGTAAGTAATATGCCTGAAGTTGTGAGATGGGAAGTGAGGTCAACAAATTACTTTAACAGAAATGCATGGAAGG
CCACACATACGTATTGGTCCACGATATGCTACAAAGCTTGTATGTACATATAACAAATTAAATGCATTGAATAGAGTGAGTTTAGTGAATTTACCAGGAT
CGGACGGAAGACAATCCGGGAGACAGGCGCTCTCGCAGAATATGTCGGGGGCACCCGTAGAAGTACAAGTAGAACAAAGTTGTTTTGCCTGATCGGATTT
GCAGCAGTCGCACTGTGCCGCGGTGGCCGGGTTAACATTGAGGCTCAAGATGACCAGGCACATGATCACCATCAAAGCGGTAGTCCTCTTTCCCTCCATT
GCCTCCTGTTGCTGCTACCTTCCTTGGTTACCTAGCTAAGTTTATTGGTTTTGTGTTGAGAGGTGATTCTTG