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Detailed information on CNT30524374


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639585Setaria italicaNymphaea colorata9.724083.3396forward
CNT30727836Setaria italicaCorchorus capsularis11.6430.9181.74115forward
CNT30381205Setaria italicaManihot esculenta11.6428.8285.22115forward
CNT30708916Setaria italicaGlycine max11.1345.6482.73110forward
CNT30570222Setaria italicaVitis vinifera11.6423.0586.96115forward

Expression of CNT30524374

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAHCLQCSEEPWRRRRTHATGWGSGSWRSGSGSPQPQTAHQTG

>peptide 2 (82 aa)
MACSAEERSMGQQQPQVRRELPAPLEVDLMLGRPRRRRQVQQEPRPELCQPLPELGRRLAGVRRHELPRQPLKELGRPAGVC*

>peptide 3 (91 aa)
MSFPDSRSKSSAALPAYADMSFSDSRAPIPAIIVLVLPSRARELSLSGISLTAVHPTKASRTSSPTAPNKSSSWGRKILHPVCFLLFFSFF*

Sequence

>CNT30524374
TTGTTTCTTGTAGTACTTGCTATATAATTCTTGTCACAGGACTGATTAGGCGTTGTTGAGGTCGACCGGGTCAAGCAGCTGCTCGCCATGGCGTGTTCTG
CCGAGGAACGCAGCATGGGACAGCAACAGCCACAGGTGCGTCGTGAGCTCCCCGCGCCCCTGGAGGTAGATCTTATGCTTGGCCGACCTCGTCGACGCCG
ACAGGTGCAGCAGGAACCCCGCCCAGAACTTTGCCAGCCGCTCCCAGAGCTCGGCCGCCGCCTTGCCGGCGTACGCCGACATGAGCTTCCCCGACAGCCG
CTCAAAGAGCTCGGCCGCCCTGCCGGCGTATGCTGACATGAGCTTCTCCGACAGCCGCGCGCCCATCCCGGCGATCATCGTGCTCGTGCTTCCGTCGCGC
GCGAGGGAGCTGAGCCTCTCGGGGATCTCCCTCACGGCTGTGCACCCGACCAAGGCGTCGCGGACCTCGTCGCCGACAGCGCCCAATAAGTCCAGTAGCT
GGGGTAGAAAAATCCTTCACCCTGTCTGTTTTCTTCTTTTCTTTTCCTTTTTTTGAGAAGCACAATGGCTTGGATTATTATAAAAGTACTTTTACATCCA
GCCCCTTGCAAAAGGACCTCTGAAAGAAATTAAAATTACATTGAAGTCCTTTGGAGGTCCTCCTGTTTTCTGGAAATTGGGAATTTGCACTGCTCTTACT
CGGGTCAAGCCTGAGCTATCAGACCAACACCTGTAGTACCAGCATACCACAGGCCACATAAGGTAGTAACCATGTGAATGTGAACCTGTAGTACCAGCAT
ACCGAGGATAGTAAAATCGCAGTGTACTCTTTGTCCCGGCCCATCTGAACCTGTAATATGGCACACTGCCTACAGTGTTCTGAAGAGCCCTGGCGTAGGA
GAAGGACACATGCCACGGGTTGGGGCTCTGGTTCATGGCGTTCAGGTTCTGGGTCGCCTCAACCTCAGACTGCCCACCAGACAGGAAC