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Detailed information on CNT30524319


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677388Setaria italicaSetaria viridis35.1110098.74317forward
CNT30687812Setaria italicaTriticum urartu4.9820.2791.1145forward

Expression of CNT30524319

Peptides detected in this lncRNA

>peptide 1 (29 aa)
EDYLKTFSRVDSPSSIDTTTEFLSSSSTP*

>peptide 2 (60 aa)
MKGEIKRENVSLISQHMSPSLISRPDWGRTTNSWLVGLCHAVPNKRKGAGWGNAIQGSPYP

>peptide 3 (45 aa)
MWWIARVRCRLRRLPQLRRAFLELRQAFPPPSFIPGRRRIAARKI*

Sequence

>CNT30524319
GAGGATTATCTAAAAACATTTTCGCGAGTTGACTCTCCGAGCTCCATCGACACCACCACGGAGTTCCTCTCTTCAAGCTCTACACCGTGATGTGGTGGAT
TGCGCGAGTCCGGTGTCGGCTCCGTCGTCTTCCTCAACTCCGACGAGCTTTTCTCGAACTCCGGCAAGCTTTTCCGCCACCATCGTTCATCCCCGGTCGA
AGAAGGATCGCTGCACGGAAGATTTGAAGGTTAAGAGTTTCAAGAGAGCAGGAGCCGAAGAGCAGTGAGAGTAACTTTTCGTTGGAGAAAGAAGAAGAAG
GTGTGTGAAGTTGTGAAGATGATGCTGAGTTCTAGGCGTACGCAACCCCCAGTCGTTTGCCTGTGAAGTTTGGAACCTCCGATTCCGTGTTTAAGCTGTG
TATCTCTGATAATGTCGTAAGTCTTACTTGTATCTTTTATGTGATACTGTTGCTGTTATTCACTGATGATGTCAGTATATGTATGAAACTTGATCCTGGC
ATACATATAGGTAGCACTTGGTTTTGTTTTAAAACCGGGTGTGACAAAAGCCTATGATACCTGGATACTAAGGGCCTAGAACAAGAATCTGTTTCAAAAC
AGAAAGGTGTGTTGTAGTTGTTGAATTTGATAGTACGTAACTAGCTATTATGATGAGACATGATCTACACACTGATCTGTGATGAAATGGCTGCCAAGTT
AAGTTTAAGTCTAAGTCTAAATGAAAGGTGAGATCAAGAGGGAGAATGTTAGTTTGATCTCCCAACATATGAGTCCGAGCCTTATCTCGCGCCCTGATTG
GGGGCGCACAACCAACTCATGGTTGGTGGGCCTCTGTCATGCAGTGCCAAATAAAAGGAAAGGTGCGGGCTGGGGGAACGCAATCCAAGGTTCACCATAC
CCA