Detailed information on CNT30524257


BLAST search results

BLAST vs Swiss-Prot:
sp|P24825|CHS2_MAIZE, E-value = 1e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180353Setaria italicaSecale cereale43.6338.485.71154forward
CNT30252573Setaria italicaAvena sativa44.1917.283.33156forward
CNT30658045Setaria italicaTriticum dicoccoides20.1120.3485.9271reverse complement
CNT30466778Setaria italicaSaccharum spontaneum35.6944.2188.89126forward
CNT3022840Setaria italicaPopulus trichocarpa26.069.4582.6192forward
CNT30150913Setaria italicaBrachypodium distachyon39.6636.0888.57140forward

Expression of CNT30524257

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MGTLWRTTVSTVRPGPKPKRTPQSKPSPALDMLPYSERTCRVARIRALSRPTLASTWSRMAGPPGWATQNTEFQSEIPSGLNASS

Sequence

>CNT30524257
CGGCAAGTGTTGCTGGAGTTGCAGGCGAATGAATGTGTACTACGGTGATCATCGATCGGGGGCGGTGATCAACTGATCATGCGGCAGTGCCGGCGGTGAT
GGGAACGCTGTGGAGGACGACGGTCTCGACGGTGAGGCCGGGGCCGAAGCCGAAGAGGACGCCCCAGTCGAAGCCCTCGCCGGCGCTGGACATGTTGCCG
TACTCGGAGAGGACGTGCCGGGTGGCGCGCATCCGGGCCTTGTCGAGGCCCACCTTGGCCTCCACCTGGTCCAGGATGGCGGGCCCGCCGGGGTGGGCCA
CCCAGAACACCGAGTTCCAGTCGGAGATCCCCAGCGGCTTGAACGCCTCCTCC