Detailed information on CNT30524241


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43193|NLTP1_SORBI, E-value = 3e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30367388Setaria italicaSorghum bicolor41.3937.7490.51137forward
CNT30621298Setaria italicaCajanus cajan26.8923.384.2789forward
CNT30151138Setaria italicaBrachypodium distachyon40.7945.6184.44135forward

Expression of CNT30524241

Peptides detected in this lncRNA

>peptide 1 (72 aa)
ADGVWDADAALGWDAGGVAGVESADPPGGVLEAVAGGAPVGGGPGGGVEAPDAVAAAAAASSTAATTASTTT*

>peptide 2 (78 aa)
VLMEYGMLTPHLDGMLAALPALSPLIPLAAFLRQLQAARLSAVVLAAELRLLTPLQQPPRRAAPRPRRRAPPPEREPC*

Sequence

>CNT30524241
GTGCTGATGGAGTATGGGATGCTGACGCCGCACTTGGATGGGATGCTGGCGGCGTTGCCGGCGTTGAGTCCGCTGATCCCCCTGGCGGCGTTCTTGAGGC
AGTTGCAGGCGGCGCGCCTGTCGGCGGTGGTCCTGGCGGCGGAGTTGAGGCTCCTGACGCCGTTGCAGCAGCCGCCGCGGCGAGCAGCACCGCGGCCACG
ACGGCGAGCACCACCACCTGAGCGCGAGCCATGCTGATGTGCGTGTTCCTGTGCTAGCTGCTAGCTGCGCTGTGGTCGATGGATCGGATGTGCTCTACAA
GCTGCTTGGGAAGAATGTGCTTTGCTTTGCT