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Detailed information on CNT30524216


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF89|CB5_ARATH, E-value = 3e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30353507Setaria italicaEragrostis tef48.827.0790.75346forward
CNT30597089Setaria italicaOryza meridionalis25.1123.0384.27178forward
CNT30117889Setaria italicaOryza nivara47.5359.6593.18337forward

Expression of CNT30524216

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MTVSRLLPKGSLRCLARFSTGPSPVTYAWMKKANMENMASRPFLISFTLRMAAWSSPLMIR*

Sequence

>CNT30524216
GTAGCATGTCTCAGGCACAAATTCTAACAGTCATATCAGATATTCAGATCAGAGATCGGAACGAAATGGTTTCTTGCCCCTCTTGATAATTTACACGCAT
GGCACATTCATCGGACCCTCACACACACATTGTTTCCGGGTAAGATCAAACGCAGCAGCAGCCTCTCACAGGCTGGGCGTCCTCTCGGCGGCGCCGGAGA
TGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGCGAGGTTCTCGACGGGGCCCTCGCCGGTGACGTACGCCTGGATGAAGAAGGCGAA
CATGGAGAACATGGCGAGCCGGCCGTTCTTGATCTCCTTCACCTTGAGGATGGCGGCCTGGTCCAGCCCGTTGATGATCCGGTAGTACTCGGCGCCGCCG
ACGAGGACGACCTCGGCGATGACGGCAACCACCAGGTTGATGGGGATGCTGTTGCCGAAGTAGCTGAGGGTGTTGCCGTCCAGGAGCAGGGCGCCGGTCT
GCATTGTATTACGGTGGCGCCGCCATTAGTTCACAGTTCAGAATTTCAGTTTCAGAGATTGCAATTGCAACTATTCTACCACTGAAATGTGTGGTCTTTG
TGAAACAATGTTGAGTTCTTTTCTTTTTTCATAAATTCAATTGCGCGCGATTGTCCGGCACATTTGGGGAAGAGATTGCTACTCAAGTATGAAGATTCTT
AAAGGTGGT