Detailed information on CNT30524155


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43193|NLTP1_SORBI, E-value = 1e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676686Setaria italicaSetaria viridis84.7710099.74384forward
CNT30555885Setaria italicaOryza glaberrima42.8317.8386.6194forward
CNT30471439Setaria italicaSaccharum spontaneum49.4584.2191.96224forward
CNT30371496Setaria italicaOryza glumipatula32.895089.93149forward
CNT30103942Setaria italicaOryza rufipogon31.7949.1589.58144forward
CNT30578263Setaria italicaOryza barthii42.8319.0686.6194forward
CNT30117882Setaria italicaOryza nivara32.4533.7989.8147forward

Expression of CNT30524155

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MLTPHLDGMLAALPALRPLIPLAAFLRQLHAARLSAVVVAAELSLLTPLQQASEGLEPWPRA*

Sequence

>CNT30524155
AGGTGTTAATTAATAGTTACCTGGAGCAGTCGGTGGAGGTGCTGATGGAGTAGGGGATGCTGACGCCGCACTTGGATGGGATGCTGGCGGCGTTGCCGGC
GTTGAGGCCGCTGATCCCCCTGGCGGCGTTCTTGAGGCAGTTGCATGCGGCGCGCCTGTCGGCGGTGGTCGTGGCGGCGGAGTTGAGTCTCTTGACGCCG
CTGCAGCAGGCGTCGGAGGGTTTGGAGCCCTGGCCGCGGGCGTAAGGGAGGCACTGGCCGATGGCGGAGTTGACCTGGCCGCCGCGGCGAGCAGCACCAC
GGCCACGACGGCGAGCACCACCACCTGAGCGCGAGCCATGATGCTGTCTTGCTGTTGTGTTAGCTGCTAGCTGCGCTCGATGGATCGGATGTGGTTTAGC
TTGCTGCTTGGGAAGAAATGTGCTTTGCTTTGCTGGTGAGGAGGGAATGTTGG