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Detailed information on CNT30524143


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30463851Setaria italicaSaccharum spontaneum38.334.2391.63203forward
CNT30101300Setaria italicaOryza rufipogon41.5130.4789.09220forward
CNT30116476Setaria italicaOryza nivara41.5134.3288.64220forward

Expression of CNT30524143

Peptides detected in this lncRNA

>peptide 1 (35 aa)
GTSAQRHRAAADELIKPGELRPTARWQRPRRRPRQ*

>peptide 2 (57 aa)
MRPPHPSRSGIRMPDPSAPTSVTPILESVPPFQMDPVRTYTVYTHLSSGSRATTSVTT

Sequence

>CNT30524143
GGGGCACATCCGCACAGCGGCACAGGGCAGCAGCTGATGAATTAATTAAGCCAGGGGAGCTTCGGCCTACAGCGCGGTGGCAGCGGCCTCGACGTCGTCC
CCGGCAGTAGCCGCCGCCGAGCGCTTCTCGTGGCACTTGTCGACGGTCTTGTAGAGGCGGTAGGGCGGGGCGTCGGTGGCGAGCCACTGCTCGACGGTGA
AGAGCTGCTGTGCGCATCCCAGGTGCGGCCCCGTGGACGTGACCTCGACGTAGTTGCAGTACCAGCCGTGGTGCGGGGCGCGGCGCGCATGCAGGGCCCC
CGGCCGCTGAAGATGTCGAGGTTGCCCCGCTCGTAGTAGTCGTGGCCGGCGCCCATGAGGCCGCCCCACCCCTCCAGGTCCGGGATCCGGATGCCCGACC
CGTCGGCGCCCACCAGCGTCACCCCGATCTTGGAGTCCGTCCCACCCTTCCAGATGGACCCCGTCCGCACGTACACCGTGTACACGCACTTGTCCTCCGG
GTCCCGCGCCACCACCTCCGTGACGACGGC