Detailed information on CNT30524139


BLAST search results

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 6e-41

BLAST vs NONCODE:
NONSTUT000620, E-value = 6e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190495Setaria italicaSecale cereale54.0241.5993.95215forward
CNT30253692Setaria italicaAvena sativa57.5421.6793.45229forward
CNT30369993Setaria italicaOryza glumipatula59.859.6590.76238forward
CNT30116557Setaria italicaOryza nivara59.847.590.76238forward

Expression of CNT30524139

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MRRCWSGGMPSLSWILAFTLSMVSDDSTSRVMVLPVRVFTKICI

>peptide 2 (83 aa)
MHYSNSSQTTTQAENEVEGGLLLDVVVRKGAAVLKLLAGKDEALLVRRDALLILDLGLHIVNGVRRLYLQGDGLASQGLHKDLH

Sequence

>CNT30524139
TTAAGAACGAACATTGATATATGAAATATAATACTTGTCCAAAAGGCACACACAGCCTTACACATATTGCCATACTAGAACGATGGCCTAAAGTACTTAT
TTAGCTAACCCGAAACTCCAATTTAACCATGACACGATGACACCATGCACTACAGCAACAGCTCACAGACCACCACGCAGGCGGAGAACGAGGTGGAGGG
TGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTT
ATCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCAGACGACTCTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATTTGCATCT