Detailed information on CNT30524117


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43193|NLTP1_SORBI, E-value = 4e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697724Setaria italicaOryza sativa50.5525.1490.27185forward
CNT30247616Setaria italicaAvena sativa47.8117.9784.57175forward
CNT30137433Setaria italicaLolium perenne47.8127.2283.43175forward
CNT30682526Setaria italicaTriticum urartu22.6815.9684.3483forward

Expression of CNT30524117

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MLTPHLDGMLAALPALRPLIPLAAFLRQLHAARLSAVVVAAELSLLTPLQQASEGLEPWPPRRAAPRPRRRAPPPEREP*

>peptide 2 (85 aa)
AVGGGADGVGDADAALGWDAGGVAGVEAADPPGGVLEAVACGAPVGGGRGGGVESLDAAAAGVGGFGALAAAASSTTATTASTTT*

Sequence

>CNT30524117
GAGCAGTCGGTGGAGGTGCTGATGGAGTAGGGGATGCTGACGCCGCACTTGGATGGGATGCTGGCGGCGTTGCCGGCGTTGAGGCCGCTGATCCCCCTGG
CGGCGTTCTTGAGGCAGTTGCATGCGGCGCGCCTGTCGGCGGTGGTCGTGGCGGCGGAGTTGAGTCTCTTGACGCCGCTGCAGCAGGCGTCGGAGGGTTT
GGAGCCCTGGCCGCCGCGGCGAGCAGCACCACGGCCACGACGGCGAGCACCACCACCTGAGCGCGAGCCATGATGCTGTCTTGCTGTTGTGTTAGCTGCT
AGCTGCGCTCGATGGATCGGATGTGGTTTAGCTTGCTGCTTGGGAAGAAATGTGCTTTGCTTTGCT