Detailed information on CNT30524109


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43194|NLTP2_SORBI, E-value = 2e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676564Setaria italicaSetaria viridis43.392.82100194forward
CNT30352810Setaria italicaEragrostis tef21.4313.5488.5496forward
CNT30367564Setaria italicaSorghum bicolor56.0343.6587.25251forward
CNT30582166Setaria italicaEchinochloa crusgalli70.5450.481.33316forward

Expression of CNT30524109

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MLTPHLDGMLAALPALRQLHAARLSAVVVAAELSLLTPLQQASEGLEPWPRA*

>peptide 2 (30 aa)
MAELTWPQLMAASEAAAASSTTATTASTTT*

Sequence

>CNT30524109
AGGTGTTAATTAATAGTTACCTGGAGCAGTCGGTGGAGGTGCTGATGGAGTAGGGGATGCTGACGCCGCACTTGGATGGGATGCTGGCGGCGTTGCCGGC
GTTGAGGCAGTTGCATGCGGCGCGCCTGTCGGCGGTGGTCGTGGCGGCGGAGTTGAGTCTCTTGACGCCGCTGCAGCAGGCGTCGGAGGGTTTGGAGCCC
TGGCCGCGGGCGTAAGGGAGGCACTGGCCGATGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCTCGGAGGCCGCCGCGGCGAGCAGCACCACGGCCA
CGACGGCGAGCACCACCACCTGAGCGCGAGCCATGATGCTGTCTTGCTGTTGTGTTAGCTGCTAGCTGCGCTCGATGGATCGGATGTGGTTTAGCTTGCT
GCTTGGGAAGAAATGTGCTTTGCTTTGCTGGTGAGGAGGGAATGTTGG