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Detailed information on CNT30524056


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697329Setaria italicaOryza sativa11.1822.9295.04121forward
CNT30217689Setaria italicaKalanchoe fedtschenkoi9.6134.6791.35104forward
CNT30367502Setaria italicaSorghum bicolor36.9763.1988.5400forward
CNT30370572Setaria italicaOryza glumipatula5.4524.1889.8359forward
CNT30481517Setaria italicaChara braunii10.8138.7483.76117forward
CNT30581883Setaria italicaEchinochloa crusgalli23.8445.4287.6258forward
CNT3040014Setaria italicaMarchantia polymorpha6.7524.2586.373forward

Expression of CNT30524056

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MALRFCVASTSDCPPERNMMPGTEGGMRRWRSFRVYSATCSGVARSLASAPGVTMDGLSRMPSNMTLFSAMA*

>peptide 2 (44 aa)
MPSLASAASPSEVYLPSCASELALARSSSASCAALTQVFCSARA*

Sequence

>CNT30524056
CAAGCTTGCATCTCAATGGCGAGCTCGATCTTTGCAGTAGCTAGCAGTAGTAACTAACGGCACGCACAAAGCATCGATGAGCACCATGCATGGATCATCA
CAGCGAAGACGTGCTTAGCTTGCGTAACCAGTATGTATCGTCGGAGTAGCTAGCCGATGAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGC
CTCGGCGGCCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTGACGCAGGTG
TTCTGCAGCGCCCGCGCGTAGGAGAAGGACACGTGCCACGGGTTGGGCCCCTGGTTCATGGCGTTGAGGTTCTGCGTCGCCTCCACCTCCGACTGCCCGC
CGGAGAGGAACATGATGCCGGGGACGGAGGGCGGGATGCGGCGGTGGAGGAGCTTCAGGGTGTACTCGGCGACCTGCTCCGGCGTGGCCCGGTCCTTAGC
CTCGGCGCCCGGCGTCACCATGGATGGCTTGAGCAGGATGCCCTCGAACATGACGTTGTTCTCCGCCATGGCGTAGAAGGTCTCGGCCCACACCTTCTGC
GCCACCTCGAAGGTCCGCTCGATGCCGCGTACCTGCGAGATGGCGGCGTAGCGGGCGAGCCCCCATGCGGCCTCCTTGACGGCGAGCTCGGATGGCCCGT
TGGGGATGCTGACGACGGTGCGCCACTTGGCGAATCGGGCGCCCTGCTGGTAGTAGGCGGCCTCGCGGGCGGCGAGGCCGTCGAGGCCCTGGCACCAGGA
CTCGTCGTTGGAGCCGGCGAGCGGGACGAGGCCCTTGTCGACCTTGATCCCGGGCACGATGCCCTGCTCGGTGAGGATGTCGACGATCCGGCGGCCCGTC
TCCTCGAAAAGGATGGCGCCGGAGATGTAGTTGCCCAGCCCCGGCGCGGTGACCAGCAGCGTCCTGTACGCCTGCCGGTTGGCCTCCGTGTTCTCCAGCC
CGATGGATGCCAGCCGCTTCCCGCACGTCGCGTTCGACTCGTCCATGGCCAGGATGCCGCGCCCAGGCGACGCGATCGTTTT