Detailed information on CNT30524047


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676813Setaria italicaSetaria viridis10096.3999.63267forward
CNT30243587Setaria italicaAvena sativa23.2221.6895.1662forward
CNT30132178Setaria italicaLolium perenne25.846.3592.7569forward
CNT30366392Setaria italicaSorghum bicolor70.4176.7389.89188forward
CNT30101397Setaria italicaOryza rufipogon30.3437.3386.4281forward
CNT30116593Setaria italicaOryza nivara25.4718.4395.5968forward

Expression of CNT30524047

Peptides detected in this lncRNA

>peptide 1 (79 aa)
NDMKPRLQRLLYWNQGIKIAQFFCICQHSPIRITLLVHNNCPSKLNASREGKHHVQTRGNFTPWMKRLGTSICGCFARL*

Sequence

>CNT30524047
TAATGACATGAAACCACGTTTGCAAAGACTATTATACTGGAACCAAGGTATCAAGATAGCACAATTTTTCTGCATATGTCAGCACTCGCCGATCCGGATA
ACATTACTAGTACATAATAACTGTCCTTCAAAATTAAACGCCTCGCGCGAAGGGAAACACCATGTCCAAACTAGGGGCAACTTCACTCCATGGATGAAGA
GGTTGGGCACATCGATCTGCGGGTGCTTCGCCAGGTTGTAGTCCTTCTTGGCGTACAGCACGCCCTC