Detailed information on CNT30524037


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30183480Setaria italicaSecale cereale12.3244.6783.08130forward
CNT30582280Setaria italicaEchinochloa crusgalli38.3937.3683.7405forward
CNT30557237Setaria italicaPanicum hallii25.521.5793.31269forward

Expression of CNT30524037

Peptides detected in this lncRNA

>peptide 1 (76 aa)
QGRNREHVLAMSITFHFSSKNDPNNTHSLRLILQRTESLSHHREHTQTRASWSTGLTRTDQTRQQFHHTDLIMAEL*

>peptide 2 (72 aa)
MLTRTTACSCSTVSLEDEAAFCNRQRGDGDGLVGCFLTLTDFLLIGLNQTSSSEDVGLHFLEAFLRQGDLSE*

>peptide 3 (63 aa)
MWPLISHTAHCCPAAKYKHWKPHLPGHSVCSLPQIPGLSQDNLSAWTQSPHSSLCPRKEGSCG*

>peptide 4 (62 aa)
MHMAVFLLSKGTKFTFTMTVTTTISKLRVFDDFIRRVQVDMTLKQYFYLHSTGYSYLVPILW*

>peptide 5 (43 aa)
MPVNKRFSTKQIFFKQVTNCSIGQSKCIWQFSCSPKAQSSLSL*

>peptide 6 (34 aa)
MTCLLGRRPAAAVPSHWRTRQPSAIGRGATGTGL*

Sequence

>CNT30524037
ACAAGGTAGAAACAGAGAGCATGTACTAGCAATGTCCATCACATTTCATTTTAGTTCTAAAAACGACCCAAATAATACACATAGCCTCCGCTTAATATTG
CAGAGGACTGAATCACTGAGTCACCACAGAGAGCATACACAAACGAGAGCAAGTTGGAGCACAGGGCTCACGCGCACAGACCAGACCAGGCAGCAGTTCC
ATCACACGGATCTTATTATGGCAGAGCTATAGGCGACCAGACCGGAGACAACCATGACATGCTTACTAGGACGACGGCCTGCAGCTGCAGTACCGTCTCA
CTGGAGGACGAGGCAGCCTTCTGCAATAGGCAGAGGGGCGACGGGGACGGGCTTGTAGGTTGCTTCCTCACCCTCACTGACTTTCTCCTCATCGGCCTGA
ACCAGACCAGCAGCAGTGAAGATGTAGGCCTTCACTTCCTCGAAGCGTTCCTCAGACAGGGAGACCTCAGCGAGTAGCTTCCACGCAGAGGTTTCAGATG
CCTCCTCATAGTCATTCCTCCGCTTCAGCACAATGTGGCCACTGATCTCCCACACGGCACATTGTTGTCCTGCAGCCAAATACAAGCACTGGAAACCACA
TTTGCCAGGTCATTCAGTGTGTTCCCTCCCTCAAATACCAGGCCTCTCACAGGATAATTTATCAGCTTGGACACAGTCACCCCACTCTTCATTGTGTCCT
CGGAAAGAGGGATCTTGTGGGTAGCTGCCTTCTCGACAGGGAAAGGCACTGACAAGTAGTATGCCTGTGAACAAAAGGTTCAGTACTAAACAAATTTTTT
TCAAACAAGTTACCAACTGCTCGATAGGCCAATCAAAATGCATATGGCAGTTTTCTTGCTCTCCAAAGGCACAAAGTTCACTTTCACTATGACAGTGACA
ACCACCATCTCAAAACTGCGGGTGTTTGATGATTTTATCAGAAGAGTACAAGTGGACATGACATTAAAACAATACTTCTATCTGCACAGTACTGGATACT
CCTATTTGGTTCCCATTTTGTGGTGATAAGTAAATTCAGATACCATGCATAGTTC