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Detailed information on CNT30524031


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EU94|PIP11_ORYSJ, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546615Setaria italicaIpomoea triloba30.5531.2388.184forward
CNT3020673Setaria italicaCitrullus lanatus30.187.8190.3683forward
CNT30631135Setaria italicaVigna unguiculata21.455.0388.1459forward
CNT30564990Setaria italicaActinidia chinensis30.5519.8690.4884forward
CNT30590722Setaria italicaMusa acuminata64.7340.4584.27178forward
CNT30435838Setaria italicaAegilops tauschii49.0954.2293.33135forward
CNT30658930Setaria italicaTriticum dicoccoides4450.6391.74121forward
CNT3013604Setaria italicaZea mays25.455.1192.8670forward
CNT30653715Setaria italicaRosa chinensis34.5516.388.4295forward
CNT30680173Setaria italicaTriticum urartu47.2753.593.08130forward
CNT30644102Setaria italicaCannabis sativa33.4521.1582.6192forward
CNT30319296Setaria italicaAsparagus officinalis33.0920.5483.5291forward
CNT3038976Setaria italicaCucumis melo21.458.6488.1459forward
CNT3065055Setaria italicaSelaginella moellendorffii22.5516.887.162forward
CNT3050399Setaria italicaCucumis sativus26.918.1187.8474forward
CNT3039904Setaria italicaMarchantia polymorpha243.9287.8866forward

Expression of CNT30524031

Peptides detected in this lncRNA

>peptide 1 (78 aa)
VPLGVGGGEDGVDEDEGADDLSAEAVALGVASRDHVGAAAVAHVQPLLEALDDAGAADGAQANVLLLALHACLQPETS*

>peptide 2 (45 aa)
MLAPPPLPMYSPCWKPLTTPAPQMAPRRTSSSLPSMLACNRRLAS*

Sequence

>CNT30524031
GTTCCTCTTGGCGTCGGTGGCGGAGAAGACGGTGTAGACGAGGATGAAGGTGCCGACGATCTCAGCGCCGAGGCCGTCGCCCTTGGTGTAGCCAGCCGCG
ACCATGTTGGCGCCGCCGCCGTTGCCCATGTACAGCCCCTGCTGGAAGCCCTTGACGACGCCGGCGCCGCAGATGGCGCCCAGGCGAACGTCCTCCTCCT
TGCCCTCCATGCTTGCCTGCAACCGGAGACTAGCTAGCTAGAAGCAGCTGCCTGAGCAAAAGCTGAGATGGTCTG