Detailed information on CNT30523988


BLAST search results

BLAST vs Swiss-Prot:
sp|O65660|PLAT1_ARATH, E-value = 2e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30441862Setaria italicaAegilops tauschii40.7315.2891.04134forward
CNT30243815Setaria italicaAvena sativa88.4597.6582.82291forward
CNT30228519Setaria italicaAnanas comosus30.713.187.13101forward
CNT30596095Setaria italicaOryza meridionalis20.0624.7295.4566forward

Expression of CNT30523988

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRPPHPSRSGIRMPDPSAPTSVTPILESVPPFQMDPVRTYTVYTHLSS

>peptide 2 (61 aa)
GLVEAVGRGVGGEPLLDGEELLCASQVRPRGRDLDVVAVPAVVRAGAVGGCPARSSRGRRP*

Sequence

>CNT30523988
CGGTCTTGTAGAGGCGGTAGGGCGGGGCGTCGGTGGCGAGCCACTGCTCGACGGTGAAGAGCTGCTGTGCGCATCCCAGGTGCGGCCCCGTGGACGTGAC
CTCGACGTAGTTGCAGTACCAGCCGTGGTGCGGGCCGGTGCCGTCGGAGGTTGCCCCGCTCGTAGTAGTCGTGGCCGGCGCCCATGAGGCCGCCCCACCC
CTCCAGGTCCGGGATCCGGATGCCCGACCCGTCGGCGCCCACCAGCGTCACCCCGATCTTGGAGTCCGTCCCACCCTTCCAGATGGACCCCGTCCGCACG
TACACCGTGTACACGCACTTGTCCTCCGG