Detailed information on CNT30523964


BLAST search results

BLAST vs Swiss-Prot:
sp|B3A0N2|NLTP_LYCBA, E-value = 1e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697225Setaria italicaOryza sativa24.537.6687.1878forward
CNT30136754Setaria italicaLolium perenne39.6254.3183.33126forward
CNT30352809Setaria italicaEragrostis tef39.6228.9792.86126forward
CNT30597201Setaria italicaOryza meridionalis39.625086.51126forward
CNT30371399Setaria italicaOryza glumipatula39.6229.7986.51126forward
CNT30104115Setaria italicaOryza rufipogon39.6241.8686.51126forward

Expression of CNT30523964

Peptides detected in this lncRNA

>peptide 1 (96 aa)
LVAVGGHADAEWHGDAALAGDAGDGAHVELLDGAGEALEAPARRLPVRAGDRRRRRRHQRRRREHHGQGEHRLHLPHRSHCIIQSVACANKLLTNC*

>peptide 2 (92 aa)
LLQSVDMLMRNGTETPHLPGMPATVPMLSFLMVPARLLRHRHAACRSALVIAAAADATSAAAANTMARANTACIFLIGAIVLYNRSRVLISC*

Sequence

>CNT30523964
CTTGTTGCAGTCGGTGGACATGCTGATGCGGAATGGCACGGAGACGCCGCACTTGCCGGGGATGCCGGCGACGGTGCCCATGTTGAGCTTCTTGATGGTG
CCGGCGAGGCTCTTGAGGCACCGGCACGCCGCCTGCCGGTCCGCGCTGGTGATCGCCGCCGCCGCCGACGCCACCAGCGCCGCCGCCGCGAACACCATGG
CCAGGGCGAACACCGCCTGCATCTTCCTCATCGGAGCCATTGTATTATACAATCGGTCGCGTGTGCTAATAAGCTGCTAACCAACTGCTAGCTCGATCGA
TGAGTGTGGATGGCTGTG