Detailed information on CNT30523938


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676837Setaria italicaSetaria viridis41.7890.38100216forward
CNT30592160Setaria italicaMusa acuminata22.2428.4784.35115forward
CNT30680513Setaria italicaTriticum urartu16.6333.3387.2186forward
CNT30349438Setaria italicaEragrostis tef13.5421.7488.5770reverse complement
CNT30619906Setaria italicaCajanus cajan17.641.3689.0191forward
CNT30116026Setaria italicaOryza nivara21.4721.184.68111forward

Expression of CNT30523938

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLAAMETPTKRANAWAMAMATRPAGSRAPPFVNC

>peptide 2 (40 aa)
MCIDRTVLLQLADIIAGEIQKGNSKKTKHNHKTRRGDNRR*

>peptide 3 (33 aa)
CDVHIHAVVQNMYLGTLNRACHVYRSNGSLTTC*

>peptide 4 (31 aa)
MMKLTRRVGCGLRTFMPFMGTPAGQPAGRRR*

Sequence

>CNT30523938
CTGTGACGTACACATTCATGCTGTCGTACAGAACATGTACTTGGGAACGCTGAACCGTGCATGTCATGTGTATAGATCGAACGGTTCTCTTACAACTTGC
TGACATCATCGCTGGTGAAATCCAAAAGGGAAATTCAAAGAAGACCAAACATAATCACAAGACGAGACGAGGTGACAATCGACGATGATGAAATTGACAC
GTCGGGTTGGGTGCGGACTGCGGACTTTCATGCCGTTCATGGGTACTCCTGCTGGCCAACCGGCTGGTAGGAGGCGATGAACACGTCGCCGTAGACAAGC
CCGGCCAGGCCGCCGCCGATGAGCGGGCCGACCCAGTAGACCCAGTTGCCGGCGAAGTTGCCGGCGGCCACGGCGGGGCCGAAGGTGACGGCGGGGTTCA
GGTGCCCGCCGGAGATGTTGGCGGCCATGGAGACGCCGACGAAGAGAGCGAACGCATGGGCGATGGCGATGGCAACCAGGCCGGCAGGGTCGAGGGCCCC
GCCCTTTGTCAATTGCG