Detailed information on CNT30523932


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQK9|NLTP1_ORYSJ, E-value = 8e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30136219Setaria italicaLolium perenne20.2911.7992.9671forward
CNT3068317Setaria italicaLeersia perrieri34.5724.290.91121forward
CNT30352811Setaria italicaEragrostis tef27.1412.7387.3795forward
CNT30578036Setaria italicaOryza barthii46.2954.3688.89162forward
CNT30498573Setaria italicaDigitaria exilis26.8619.7190.4394forward

Expression of CNT30523932

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MLTPHLDGMLAALPALRPLIPLAAFLRHWPMAELTWPQLMAASEAAAASSTTATTASTTT*

Sequence

>CNT30523932
TGATGGATCCATAGGTGTTAATTAATAGTTACCTGGAGCAGTCGGTGGAGGTGCTGATGGAGTAGGGGATGCTGACGCCGCACTTGGATGGGATGCTGGC
GGCGTTGCCGGCGTTGAGGCCGCTGATCCCCCTGGCGGCGTTCTTGAGGCACTGGCCGATGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCTCGGAG
GCCGCCGCGGCGAGCAGCACCACGGCCACGACGGCGAGCACCACCACCTGAGCGCGAGCCATGATGCTGTCTTGCTGTTGTGTTAGCTGCTAGCTGCGCT
CGATGGATCGGATGTGGTTTAGCTTGCTGCTTGGGAAGAAATGTGCTTTG