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Detailed information on CNT30523930


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676381Setaria italicaSetaria viridis35.2125100337forward
CNT30189315Setaria italicaSecale cereale6.2721.4393.3360forward
CNT30287060Setaria italicaTriticum aestivum15.7845.2188.74151forward
CNT30387278Setaria italicaTriticum turgidum30.222.2587.89289forward
CNT30552730Setaria italicaOryza glaberrima21.5347.6987.38206forward
CNT30464934Setaria italicaSaccharum spontaneum38.3517.4192.37367forward
CNT304026Setaria italicaZea mays35.4221.992.33339forward
CNT30347471Setaria italicaEragrostis tef38.8730.9791.4372forward
CNT30366099Setaria italicaSorghum bicolor37.9314.6793.66363forward
CNT30595688Setaria italicaOryza meridionalis24.5637.0789.36235forward
CNT30369690Setaria italicaOryza glumipatula21.5320.6486.89206forward
CNT30100535Setaria italicaOryza rufipogon21.531187.38206forward
CNT30576048Setaria italicaOryza barthii27.0642.8888.42259forward
CNT30585527Setaria italicaEchinochloa crusgalli17.9731.0591.28172forward
CNT30115991Setaria italicaOryza nivara21.5320.7587.38206forward
CNT30603622Setaria italicaOryza punctata21.5330.788.35206forward
CNT30558443Setaria italicaPanicum hallii38.2425.1494.54366forward

Expression of CNT30523930

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MNGGESRAMDSVHGVAAGFKVKITDLHLRNNFRDTRELGHFFGTRCVAISRSLEKD*

Sequence

>CNT30523930
CAACTCAAATAAATCTTATTCATAAATTGCTTTGACAGACATTTCTCCATACGTATGCTCATTGTGGTAGACGCAGCTGACCACCTAGAGCGGTATACTT
ATTCAGATTGATCATTAGCATGTGGCACATCAGAACCCATGCTTACAATCGATCATTTTCATAATAAATAGCCTGGCTTGGCTGCTTCACACAATAACCA
AACGACAATCGCAACATTTAGAAAAAAAAAATAACTCAGCAGCGTCACATGAATGGTGGAGAAAGCAGAGCCATGGATAGCGTTCATGGAGTAGCCGCAG
GGTTCAAAGTCAAAATCACAGATCTCCATCTCAGGAATAATTTCAGAGATACCAGAGAGCTTGGTCATTTCTTTGGCACACGTTGTGTGGCCATCAGCAG
AAGTCTTGAAAAAGACTGAAGCTTTCTTCTTGTCCAGACCAGTCTTGCAGGATCTCCAATCACATAAGCATTACCACCAGACTTCAGCAAGCTCAATAAT
CCTTGGAATGGTGAGCAGGAGCTTGGTAGTCCCACATGTTTTGATGACAATCTTCAGAGGATAGATAAACAGGCTCGACTCAGAGAGGACATAGGAGTCA
AAATCCTTGTTGGAGAGCTCGGACACGATGGTGCACCGTGCAAGATCCAAAACAGAATCAATCTGGGCCCTGGAAAGGGCACGCAAACCACGCCCATGAG
GGTCGACAAAGACAGGCGCCTCAGAGAAGGTGATCTCAAGGCGCTTCTCATAGCCCTCAAACCCGATCGCTGAGACCGGGTGAGCGTCAGCAGCAGAAAG
AACAGCCATTGGAGCGGGTGAGTGAGAAAACGATGCTGGAGATGGAGGGAGGACAGCAGGCCAGAGAGATTGGTCAGAATCAAAGCGTTAGAAAAGAAAT
CCTAAACTACTAGGACGGGGAAGCACGGAAGGGATATCAGGATGGCTTCTTCGCGCA