| Target | Query species | Target species | Query coverage (%) | Target coverage (%) | Identity | Alignment length (nt) | Orientation |
| CNT30691216 | Setaria italica | Oryza sativa | 34.15 | 3.56 | 90.99 | 111 | forward |
| CNT30675102 | Setaria italica | Setaria viridis | 58.46 | 76.31 | 88.95 | 190 | reverse complement |
| CNT30554746 | Setaria italica | Oryza glaberrima | 28.62 | 4.54 | 93.55 | 93 | forward |
| CNT3068416 | Setaria italica | Leersia perrieri | 27.38 | 5.45 | 87.64 | 89 | reverse complement |
| CNT30108677 | Setaria italica | Oryza longistaminata | 53.85 | 7.14 | 84 | 175 | forward |
| CNT30116366 | Setaria italica | Oryza nivara | 53.85 | 54.18 | 82.86 | 175 | reverse complement |
>CNT30523910
AGGCTTCGGGGGCGTTTTCTTCCCGTGTCTTATTTTTAGCACGTGTCACATCGAATGTTTAGATACTAATTAGGAGTAGTAAACGTAGACTATTTACAAA
ACCAATTACATAAGTGGAATCTAAACGGCGAGACGAATCTATTAAGCCTAATTAATCCATCATTAGCAAATATTTACTGTAGCAACACATTGTCAAATCA
TGGACTAATTAGGCTTAATAGATTCGTCTCGCCGTTTAGATTCGTCTTATGTAATGGGTTTTGTAAATAGTCTACGTTTAATACTCCTAATTAGTATCTA
AACATTCGATGTGATGGGTGCTAAA