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Detailed information on CNT30523899


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 2e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30319836Setaria italicaAsparagus officinalis20.7115.2981.15122forward
CNT30578122Setaria italicaOryza barthii21.916.3793.8129forward

Expression of CNT30523899

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MPSLASAASPSEVYLPSCASELALARSSSASCAALTFSGTPPHVLRQVFCSARA*

>peptide 2 (29 aa)
MPCSPSSRISGSTIGTSPLSCSVDSIPSVL

>peptide 3 (57 aa)
MALRFCVASTSDCPPERNMMPGTEGGMRRWRSFRVYSATCSGVARMPSNMTLFSAMA*

Sequence

>CNT30523899
ACGTGCTTAGCTTGCGTAACCAGTATGTATCGTCGGAGTAGCTAGCCGATGAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGG
CCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTGACGTTCTCCGGCACGCC
GCCCCACGTCTTGAGGCAGGTGTTCTGCAGCGCCCGCGCGTAGGAGAAGGACACGTGCCACGGGTTGGGCCCCTGGTTCATGGCGTTGAGGTTCTGCGTC
GCCTCCACCTCCGACTGCCCGCCGGAGAGGAACATGATGCCGGGGACGGAGGGCGGGATGCGGCGGTGGAGGAGCTTCAGGGTGTACTCGGCGACCTGCT
CCGGCGTGGCCCGGATGCCCTCGAACATGACGTTGTTCTCCGCCATGGCGTAGAAGGTCTCGGCCCACACCTTCTGCGCCACCTCGAAGGTCCGCTCGAT
GCCGTGCTCGCCGTCCAGCAGGATCTCCGGCTCTACGATCGGCACAAGTCCGTTGTCCTGCTCGGTCGATTCCATTCCATCGGTGTTAG