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Detailed information on CNT30523860


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30137691Setaria italicaLolium perenne13.9257.1484.66176reverse complement
CNT3010522Setaria italicaZea mays13.9236.7494.89176forward
CNT30367305Setaria italicaSorghum bicolor15.4349.4993.33195forward

Expression of CNT30523860

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MVPVGSTCAAAGPRRGAATLAVMPTTRPRPEGGKWGARAGAGIGREVAEAPGVASPLLSCCSSPASGGGGGGGGVGGLCCVRWGLGWVG

>peptide 2 (44 aa)
MERKGWAGRWAHQGGSSRRGSSCRIRRAACRRPPGSWRRRWAPS*

>peptide 3 (55 aa)
MVSFISMVALGRVLISRVLVGVGGEGGAGRSGVSEAGTTAAGEEEEVGRAPSGRG*

Sequence

>CNT30523860
GGCATGCAAATGTTAATTCCACAGAAGTGTAGCTTAATTTGCTACTTTCATGTCAAGTGAAGCAAATTGTACAATATTTTTGTTCGTGCAGGGTTGATGT
ATTAGTGAGTTAAAAAATATTTTTTTCCAGGAAACTATTAAAAAAATCAAGCACATAAGCAAAAGGTGTATAGTAAACAATCACTGCCATACAAAATTCA
CATAAATACAAAAGGCCCTCTGTTTTGCTTGCGGTATGATGACATGGGTTTCCAGCTGAGATTTTTTTTTCAGAAAAATTGTAAGTATCTAGTGCCCAAG
ATGCTAGTTTATACCCTTATTTAATCCAACATAACTGGAGGCGGCGAAACTGCCAGTTGTTCAACCCGAAACCAGCGGCCGTTACAATTTTTAACCATAG
GGTGAGTTAAAAATAGCACAGTTAAAAAAAGAAAGAGCACCCTGCTGTGACTGTTTAGCTGAAAAGGCCCCGAAGTTTGTGGAACGCAAGGGGAGGCCTT
TACTAGTTTACTGTACAAAGTTCCCGAATCAGGCACAAATCGCCGTGGCAAAATTTTTAAAATGGCAGGATCTTAATCAAAGAGAAGCTTTAAAAAAATT
TCATCCAGATTTGGGGCGAAAACGACGTGGGATTAACCATAAACGAATGGAAAGGAAAGGGTGGGCGGGTAGGTGGGCTCACCAGGGAGGCAGCAGTCGC
CGAGGCAGTTCCTGCCGCATCCGGCGCGCGGCTTGTCGGCGTCCTCCTGGTAGTTGGAGACGACGGTGGGCACCCTCCTGATGGTGAGCTTCATCTCCAT
GGTTGCTCTCGGGCGGGTGCTAATCTCTCGGGTGCTTGTCGGGGTCGGGGGAGAGGGAGGGGCAGGGAGGAGCGGCGTCTCAGAGGCAGGGACGACCGCC
GCCGGCGAGGAAGAGGAGGTCGGACGGGCTCCCTCCGGCCGAGGGTAGCGCCCCGCGGCCCCCGTGCGGGTCGGGGCTGGTGGCGACGGCGGAGGCGATG
GTGCCCGTGGGCTCCACCTGCGCAGCTGCGGGGCCGCGCCGGGGGGCTGCAACGCTAGCCGTGATGCCTACAACTCGGCCACGCCCAGAGGGGGGGAAGT
GGGGGGCAAGGGCTGGTGCGGGGATCGGGCGGGAGGTCGCGGAGGCTCCTGGAGTCGCGTCCCCTCTCCTCTCCTGTTGCTCTTCTCCGGCGAGCGGCGG
CGGTGGCGGTGGCGGGGGCGTTGGGGGGTTGTGCTGCGTGCGATGGGGACTGGGGTGGGTTGGG