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Detailed information on CNT30523823


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30685530Setaria italicaTriticum urartu23.634.8685.92206forward
CNT30367441Setaria italicaSorghum bicolor25.6628.8795.54224forward

Expression of CNT30523823

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MHMAVFLLSKGTKFTFTMTVTTTISKLRVFDDFIRRVQVDMTLKQYFYLHSTGYSYLVPILW*

>peptide 2 (66 aa)
MSITFHFSSKNDPNNTHSLRLILQRTESLSHHREHTQTRASWSTGLTRTDQTRQQFHHTDLIMAEL*

>peptide 3 (50 aa)
MPVNKRFSTKQIFFKQVTNCSIGQFLCKLFRSKCIWQFSCSPKAQSSLSL*

Sequence

>CNT30523823
GGCCGAGGCAAATTTTCGCATTTAAAATCTTCTAGATCAATAATTTACAGGACCCCAAAACATCAGACGATGCAGTGACCAATTCTCTCTTGTTTATATA
CGACCCACAAGGTAGAAACAGAGAGCATGTACTAGCAATGTCCATCACATTTCATTTTAGTTCTAAAAACGACCCAAATAATACACATAGCCTCCGCTTA
ATATTGCAGAGGACTGAATCACTGAGTCACCACAGAGAGCATACACAAACGAGAGCAAGTTGGAGCACAGGGCTCACGCGCACAGACCAGACCAGGCAGC
AGTTCCATCACACGGATCTTATTATGGCAGAGCTATAGCACATTGTAAGGCACATTGTTGTCCTGCAGCCAAATACAAGCACTGGAAACCACATTTGCCA
GGTCATTCAGTGTGTTCCCTCCCTCAAATACCAGGCCTCTCACAGGATAATTTATCAGCTTGGACACAGTCACCCCACTCTTCATTGTGTCCTCGGAAAG
AGGGATCTTGTGGGTAGCTGCCTTCTCGACAGGGAAAGGCACTGACAAGTAGTATGCCTGTGAACAAAAGGTTCAGTACTAAACAAATTTTTTTCAAACA
AGTTACCAACTGCTCGATAGGCCAGTTTCTGTGCAAATTATTCAGATCAAAATGCATATGGCAGTTTTCTTGCTCTCCAAAGGCACAAAGTTCACTTTCA
CTATGACAGTGACAACCACCATCTCAAAACTGCGGGTGTTTGATGATTTTATCAGAAGAGTACAAGTGGACATGACATTAAAACAATACTTCTATCTGCA
CAGTACTGGATACTCCTATTTGGTTCCCATTTTGTGGTGATAAGTAAATTCAGATACCATGCATAGTTCAATA