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Detailed information on CNT30523795


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71T45|H32_EUPES, E-value = 1e-41

BLAST vs NONCODE:
NONBRAT001321, E-value = 6e-25

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676531Setaria italicaSetaria viridis32.1572.3698.99199forward
CNT30547624Setaria italicaIpomoea triloba10.8223.5186.5767forward
CNT30698329Setaria italicaQuercus lobata45.459.5383.63281forward
CNT30591253Setaria italicaMusa acuminata18.4236.5492.98114forward
CNT30508427Setaria italicaSolanum lycopersicum18.2632.5683.19113forward
CNT30240523Setaria italicaAvena sativa50.0849.5291.94310forward
CNT30464179Setaria italicaSaccharum spontaneum25.5332.3894.94158forward
CNT30610039Setaria italicaGossypium raimondii20.6814.5581.25128forward
CNT30720263Setaria italicaTriticum spelta49.7652.293.51308forward
CNT30329187Setaria italicaDioscorea rotundata15.9925.5286.8799forward
CNT30148402Setaria italicaBrachypodium distachyon43.6254.9988.89270forward

Expression of CNT30523795

Peptides detected in this lncRNA

>peptide 1 (32 aa)
QEQHFFIKQINPGGTYQMLKSTPGCFFPVCYK*

>peptide 2 (31 aa)
MRRASWMSLGMMVTLLAWMAQRLVSSKSPTR*

>peptide 3 (46 aa)
MSSSVLFWYLRISRSATVPGRKRWGFFTPPVAGADLRAALVASCFLG

Sequence

>CNT30523795
CAGGAACAGCATTTCTTTATTAAACAGATCAATCCTGGGGGGACATATCAAATGCTGAAATCAACTCCTGGTTGCTTCTTTCCAGTCTGCTACAAATAGA
TGGCGCATAACAAACAGGAAATCCAGAAAGGGCGAAGCCATTCAGAAATTTCAGAAACCAGTCATCATATTCCATTGCAGTGAGACCAATACATCCATAA
GATTACTAAAGGATTGCACAGCAGCACAGAATTCATCCATCTAGTGCCAGCCCTACTGAACAGAGAAAGAACACCACGACACAGCAGCACTAGCAGCACG
CGCGCTCACGCCCTCTCGCCCCTGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACCCTCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCT
CGAAGAGCCCCACCAGGTAGGCCTCCGCGGCCTCCTGCAGCGCCGCCACGGCGGACGACTGGAAGCGGAGCTTGCGGATGAGCAGCTCCGTGCTCTTCTG
GTACTTGCGGATCTCCCGGAGCGCGACGGTGCCGGGGCGGAAGCGGTGGGGCTTCTTCACGCCGCCGGTGGCCGGAGCAGACTTGCGAGCGGCCTTGGTG
GCCAGCTGCTTCCTCGGGG