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Detailed information on CNT30523788


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676504Setaria italicaSetaria viridis37.3998.7499.49393forward
CNT30640852Setaria italicaNymphaea colorata11.735.4586.18123forward
CNT30261311Setaria italicaBrassica rapa16.5645.6781.61174forward
CNT30557055Setaria italicaPanicum hallii29.2141.192.18307forward
CNT30551796Setaria italicaOryza brachyantha16.1821.7181.76170forward

Expression of CNT30523788

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MDASRFPHVAFDSSMARMPRPGDAIVFCN

>peptide 2 (68 aa)
MPSLASAASPSERNMMPGTEGGMRRWRSFRVYSATCSGVARSLASAPGVTMDGLSRMPSNMTLFSAMA*

>peptide 3 (34 aa)
MPCSPSSRISGSTIGTSPLSCSVDSIPSVLAFIN*

Sequence

>CNT30523788
ACTCGATCGATCAACTTCATAATTTAATTTCTCTTATACATATAGTATAGCATTACCATGCCTCAAGCTTGCATCTCAATGGCGAGCTCGATCTTTGCAG
TAGCTAGCAGTAGTAACTAACGGCACGCACAAAGCATCGATGAGCACCATGCATGGATCATCACAGCGAAGACGTGCTTAGCTTGCGTAACCAGTATGTA
TCGTCGGAGTAGCTAGCCGATGAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGAGGAACATGATGCCG
GGGACGGAGGGCGGGATGCGGCGGTGGAGGAGCTTCAGGGTGTACTCGGCGACCTGCTCCGGCGTGGCCCGGTCCTTAGCCTCGGCGCCCGGCGTCACCA
TGGATGGCTTGAGCAGGATGCCCTCGAACATGACGTTGTTCTCCGCCATGGCGTAGAAGGTCCGCTCGATGCCGTGCTCGCCGTCCAGCAGGATCTCCGG
CTCTACGATCGGCACAAGTCCGTTGTCCTGCTCGGTCGATTCCATTCCATCGGTGTTAGCTTTTATTAATTAGCTGGATGAACTATCTCCATGGCTAGAA
GCAAGCAAGAAGGCGTACCTGCGAGATGGCGGCGTAGCGGGCGAGCCCCCATGCGGCCTCCTTGACGGCGAGCTCGGATGGCCCGTTGGGGATGCTGACG
ACGGTGCGCCACTTGGCGAATCGGGCGCCCTGCTGGTAGTAGGCGGCCTCGCGGGCGGCGAGGCCGTCGAGGCCCTTGTCGACCTTGATCCCGGGCACGA
TGCCCTGCTCGGTGAGGATGTCGACGATCCGGCGGCCGTCGACGGCGGACTGGTAGAGCGTCTCCTCGAAAAGGATGGCGCCGGAGATGTAGTTGCCCAG
CCCCGGCGCGGTGACCAGCAGCGTCCTGTACGCCTGCCGGTTGGCCTCCGTGTTCTCCAGCCCGATGGATGCCAGCCGCTTCCCGCACGTCGCGTTCGAC
TCGTCCATGGCCAGGATGCCGCGCCCAGGCGACGCGATCGTTTTCTGCAAC