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Detailed information on CNT30523732


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2V2V3|PLAT3_ARATH, E-value = 9e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676677Setaria italicaSetaria viridis21.0345.49100106forward
CNT30565935Setaria italicaActinidia chinensis27.3828.488.41138forward

Expression of CNT30523732

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MAQGAARMQGRPTPPGPGSGCPTRRRPPASPRSWSPSHPSRWTPSARTPCTRTCPPGPA

>peptide 2 (38 aa)
MPDPSAPTSVTPILESVPPFQMDPVRTYTVYTHLSSGSR

>peptide 3 (44 aa)
PAQLLHAARGTSAQRHRAAADELIKPGELRPTARWQRPRRRPRQ*

Sequence

>CNT30523732
GCCTGCACAATTATTACATGCCGCCCGGGGCACATCCGCACAGCGGCACAGGGCAGCAGCTGATGAATTAATTAAGCCAGGGGAGCTTCGGCCTACAGCG
CGGTGGCAGCGGCCTCGACGTCGTCCCCGGCAGTAGCCGCCGCCGAGCGCTTCTCGTGGCACTTGTCGACGGTCTTGTAGAGGCGGTAGGGCGGGGCGTC
GGTGGCGAGCCACTGCTCGACGGTGAAGAGCTGCTGTGCGCATCCCAGGTGCGGCCCCGTGGACGTGACCTCGACGTAGTTGCAGTACCAGCCGTGGTGC
GGGCCGGTGCCGTCGGAGGTGAGGTTCATGGCGCAGGGCGCGGCGCGCATGCAGGGCCGCCCCACCCCTCCAGGTCCGGGATCCGGATGCCCGACCCGTC
GGCGCCCACCAGCGTCACCCCGATCTTGGAGTCCGTCCCACCCTTCCAGATGGACCCCGTCCGCACGTACACCGTGTACACGCACTTGTCCTCCGGGTCC
CGCG