CANTATAdb - search

Detailed information on CNT30523729

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3017878	Setaria italica	Zea mays	43.2	46.45	92.83	321	forward
CNT30557185	Setaria italica	Panicum hallii	40.92	47.8	92.43	304	forward

Expression of CNT30523729

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MPAASRTSRSTRPWPGCRAQATRSFSATHHVIIISFSKQD

>peptide 2 (40 aa)
MDASRFPHVAFDSSMARMPRPGDAIVFCNSPCHHYFFQQAR

>peptide 3 (29 aa)
EGSFYAHSTIYAKYSIDQLHNLISLIHIV*

>peptide 4 (72 aa)
MPSLASAASPSEVYLPSCASELALARSSSAPWHQDSSLEPASGTRPLSTLIPGTMPCSVRMSTIRRPSTADW*

Sequence

>CNT30523729
GGGAAGGATCATTTTATGCCCATTCAACAATCTATGCAAAATACTCGATCGATCAACTTCATAATTTAATTTCTCTTATACATATAGTATAGCATTACCA
TGCCTCAAGCTTGCATCTCAATGGCGAGCTCGATCTTTGCAGTAGCTAGCAGTAGTAACTAACGGCACGCACAAAGCATCGATGAGCACCATGCATGGAT
CATCACAGCGAAGACGTGCTTAGCTTGCGTAACCAGTATGTATCGTCGGAGTAGCTAGCCGATGAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCC
TTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGCCCTGGCACCAGGACTCGT
CGTTGGAGCCGGCGAGCGGGACGAGGCCCTTGTCGACCTTGATCCCGGGCACGATGCCCTGCTCGGTGAGGATGTCGACGATCCGGCGGCCGTCGACGGC
GGACTGGTAGAGCGTCTCCTCGAAAAGGATGGCGCCGGAGATGTAGTTGCCCAGCCCCGGCGCGGTGACCAGCAGCGTCCTGTACGCCTGCCGGTTGGCC
TCCGTGTTCTCCAGCCCGATGGATGCCAGCCGCTTCCCGCACGTCGCGTTCGACTCGTCCATGGCCAGGATGCCGCGCCCAGGCGACGCGATCGTTTTCT
GCAACTCACCATGTCATCATTATTTCTTTCAGCAAGCAAGATG