Detailed information on CNT30523702


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697529Setaria italicaOryza sativa23.828.8893.28119forward
CNT30676742Setaria italicaSetaria viridis49.234.0799.19246forward
CNT30180208Setaria italicaSecale cereale17.220.4384.8886forward
CNT30137831Setaria italicaLolium perenne18.621.5892.4793forward
CNT305897Setaria italicaZea mays23.625.3894.07118forward
CNT30680985Setaria italicaTriticum urartu12.424.3187.162forward
CNT30349480Setaria italicaEragrostis tef15.832.2489.8779forward
CNT30582696Setaria italicaEchinochloa crusgalli23.422.4194.87117forward
CNT30551854Setaria italicaOryza brachyantha2114.8992.38105forward

Expression of CNT30523702

Peptides detected in this lncRNA

>peptide 1 (94 aa)
MKKLMTTLLALLFSRYSSMIPALADPVVAVTAKTAARPSSAARRPSAACGTAAAGLSPTTLDELTPAMTFSLTWCGMAVAVRAWLAARRVGRRWF

>peptide 2 (70 aa)
LLLGEVLAAGEVVGELAAAELHGVGAREVSAAGGKPLLVVQLLTIVAQTTNVILSAFTFGQINNKATILK*

Sequence

>CNT30523702
CTTCTGCTTGGCGAGGTCCTGGCAGCCGGTGAAGTTGTAGGGGAACTGGCAGCTGCCGAACTCCACGGTGTAGGCGCGCGCGAAGTTAGCGCCGCTGGTG
GCAAGCCTCTTCTTGTCGTTCAGCTCCTGACCATCGTAGCACAAACCACAAATGTAATCTTGTCAGCTTTCACTTTCGGACAAATAAATAACAAAGCAAC
AATTCTGAAATAAATGAAGAAACTGATGACGACCTTGTTGGCCTTGCTCTTCTCGAGGTACTCGTCGATGATCCCGGCCTTGGCCGACCCGGTGGTGGCG
GTGACGGCGAAGACGGCCGCCAGGCCGAGCAGCGCGGCGCGCCGGCCCTCGGCGGCCTGCGGCACCGCCGCGGCGGGCTTGAGCCCGACGACGCTGGATG
AGCTCACGCCGGCCATGACCTTCTCCTTGACTTGGTGTGGTATGGCTGTGGCTGTGCGTGCTTGGTTGGCAGCAAGGAGAGTGGGTCGGCGATGGTTTTG