Detailed information on CNT30523695


BLAST search results

BLAST vs Swiss-Prot:
sp|P27524|CB4A_SOLLC, E-value = 2e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676400Setaria italicaSetaria viridis34.6759.2799.66294forward
CNT30517895Setaria italicaJuglans regia61.7949.6778.24524forward
CNT30728490Setaria italicaCorchorus capsularis17.2223.4784.93146forward
CNT30506734Setaria italicaNicotiana attenuata30.5424.4879.15259forward
CNT30180937Setaria italicaSecale cereale12.3821.3888.57105forward
CNT30385668Setaria italicaTriticum turgidum25.1240.5790.61213forward
CNT30539684Setaria italicaBrassica napus17.8135.3683.44151forward
CNT30553353Setaria italicaOryza glaberrima31.4937.2489.89267forward
CNT30436497Setaria italicaAegilops tauschii38.6852.491.46328forward
CNT30242488Setaria italicaAvena sativa54.7258.8890.52464forward
CNT30657766Setaria italicaTriticum dicoccoides38.6849.492.07328forward
CNT3079565Setaria italicaBrassica juncea37.9732.8684.16322forward
CNT30464459Setaria italicaSaccharum spontaneum63.0961.0794.58535forward
CNT30607010Setaria italicaGossypium raimondii44.4646.0978.51377forward
CNT30680328Setaria italicaTriticum urartu52.1250.1789.37442forward
CNT30346723Setaria italicaEragrostis tef25.9440.5995.45220forward
CNT30358300Setaria italicaLactuca sativa40.3351.9879.82342forward
CNT30370016Setaria italicaOryza glumipatula44.9343.3490.81381forward
CNT30151656Setaria italicaBrachypodium distachyon24.8844.2390.52211forward
CNT30101411Setaria italicaOryza rufipogon43.7552.491.11371forward
CNT30575967Setaria italicaOryza barthii50.8352.9590.02431forward
CNT30585419Setaria italicaEchinochloa crusgalli52.1245.6696.61442forward
CNT30498137Setaria italicaDigitaria exilis60.553.1195.32513forward
CNT30116579Setaria italicaOryza nivara55.547590.66471forward
CNT30558336Setaria italicaPanicum hallii37.1554.1294.29315forward

Expression of CNT30523695

Peptides detected in this lncRNA

>peptide 1 (82 aa)
LTHPALIDSRNRSGLYYMVHTWKKRTPHLVHAHHPKEVTNTDTFAATRSSLASNHPINPMQGPLMHASDLMQQYVPSPRAQS*

>peptide 2 (47 aa)
MEKKNSPFGSRTPPKRSHEHRYICCYALFFSLQSPNQSHARSIDACV*

>peptide 3 (80 aa)
MSSSCVPRREPKEKGAMAPGSAPASNQGMPLHAWPTKMPSTAAIAHRPWISSASRYHLRNAGSLPRPSGSKPKSPGSLAYE

Sequence

>CNT30523695
TCCTCACTCATCCTGCCTTAATTGATTCCAGAAATCGATCCGGACTATATTACATGGTACATACATGGAAAAAAAGAACTCCCCATTTGGTTCACGCACA
CCACCCAAAAGAAGTCACGAACACAGATACATTTGCTGCTACGCGCTCTTCTTTAGCCTCCAATCACCCAATCAATCCCATGCAAGGTCCATTGATGCAT
GCGTCTGATCTGATGCAGCAGTACGTCCCCTCACCGCGCGCGCAATCGTGAACTAACTCGGCCGATTCGATCGATGAGTACAAGTACAGACGGCCGAGCG
CGCCGAGCGGCGTCTTGCCCTGTCCGGCCTCGAAGTAGAAGGTGAGCATGGCGAGCATGGCGATGCGGGCGTGCTTGATCTCGGCCAGCTTGAGCCGCTC
GAGCTTCTCGGTGTCGGGGATGTAGACGCCGTCCTTGACGGTGCCGGCGAGGCCGAGCGGGTCGAAGAACTTGCCGCCGGGGTATCCCTGGTCGCCGGTG
AAGTTGGCGAAGTTCTCGGCGGTGCGGGACCATGGGGTGGCCCACTCGACGGACTGCGAGTCCGGGTTGAAAAAGTCGACCCACCGCTTGGATTCGACCC
ACCCCATGAGCAGCAGCTGCGTGCCGAGGAGGGAGCCGAAGGAGAAGGGTGCGATGGCGCCCGGGTCGGCGCCGGCCTCGAACCAGGGGATGCCGCTCCA
CGCCTGGCCGACGAAGATGCCCAGCACGGCGGCCATCGCCCACCGCCCGTGGATCAGCTCCGCCTCGCGGTACCACTTGAGGAACGCCGGGTCCTTGCCC
AGGCCCAGTGGGTCGAAGCCGAAGTCACCGGGGAGTCTGGCATATGAG