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Detailed information on CNT30523658


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84PD8|SAP11_ORYSJ, E-value = 9e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30468767Setaria italicaSaccharum spontaneum21.7811.8691.92198forward
CNT3067877Setaria italicaLeersia perrieri21.8918.8388.94199forward
CNT30580811Setaria italicaEchinochloa crusgalli21.6719.3589.85197forward

Expression of CNT30523658

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLPPSQNLTILAARTTGFSRAMASRPTPL*

>peptide 2 (53 aa)
MPPMICSIFFPSSSSSCLWDPQEQHDDNTLARPVTFKFLVKKEKKEKRNKKGT*

>peptide 3 (92 aa)
MAPVDRRRPGRLVGRGRLHGPPRWPVNGRRERRHHRQRRWRREGGGRSWPRLVERRGGSRRGRRRLWAIRRGRGEGRRAEHRRRRRHTGGLA*

Sequence

>CNT30523658
TCAAGCTGGGCAATAGGGAGATTCCAATTTATAATTTAATTTTATACAGAGAGAGAGAGAGAGAGAAAATTAAATAGAAGATTGTGATTTGTAGTAGGAC
AACACACCAAACCAACCCTATCTCTTCCCCTCCACCCCCAACCACCGCTACAACAACATTATCATCGCACTGTTCTTGCTTTTGATCCCTTTCGTAGCTG
CTTCCCCGCCTGCCATGCCTCCCATGATCTGCTCCATCTTTTTTCCTTCATCTTCTTCTTCTTGTTTATGGGATCCTCAAGAACAGCACGATGATAACAC
CCTCGCTCGACCGGTCACCTTTAAATTTCTTGTAAAGAAGGAAAAGAAAGAAAAGAGAAATAAAAAGGGAACTTGAGAGGGAGATCCAACGATCGATCGA
TCTCTGCGGATCGGTGTAGGCGTCCTCCGTCCGATGCTCCCTCCCTCTCAGAACCTAACGATCTTGGCCGCGCGCACGACGGGGTTCTCCCGGGCGATGG
CGTCCCGGCCGACGCCCTTGTAGTCGAAATTGCAGTCGTGGCGGTCCGAGTACCGGTGCGCGCCGCAGAAGAGCTCGCCGCACCGGCACCGGAACCCCGT
CAGCCCCACGCGCTTCCGGCAGTTATGGCACCGGTTGACCGACGACGTCCGGGGCGCCTTGTTGGAAGAGGACGACTCCACGGGCCCCCCCGCTGGCCGG
TCAACGGCCGGAGAGAACGGCGCCACCACCGCCAGCGGCGTTGGCGCAGAGAAGGCGGAGGCCGCAGCTGGCCACGGCTTGTCGAACGCCGCGGTGGTAG
TAGAAGGGGACGGCGGCGGCTCTGGGCGATCCGGCGGGGCCGCGGGGAGGGGAGGAGAGCAGAGCACAGGAGGAGGCGGAGGCACACCGGCGGCCTGGCC
TGAGCTGAG