Detailed information on CNT30523645


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695832Setaria italicaOryza sativa29.2612.3286.0879forward
CNT30721730Setaria italicaTriticum spelta22.5922.0290.1661forward
CNT30108228Setaria italicaOryza longistaminata35.9310.0792.7897forward
CNT30102939Setaria italicaOryza rufipogon20.745.8587.556forward
CNT30117331Setaria italicaOryza nivara35.938.3691.7597forward

Expression of CNT30523645

Peptides detected in this lncRNA

>peptide 1 (40 aa)
PAKLLQYFLERSSVRLTGAGGATGASASGEDSTLLTWSTE*

>peptide 2 (89 aa)
AGEALAVLFGEEFGEVDRSRRGHGRLGLRGGQHTADLEHRVIVAVALDLLDEGDGLHGVSSVIDDERHLAAAVLRYVDVPCHAGGKPGSL

Sequence

>CNT30523645
GCCGGCGAAGCTCTTGCAGTACTTTTTGGAGAGGAGTTCGGTGAGGTTGACCGGAGCCGGCGGGGCCACGGGCGCCTCGGCCTCCGGGGAGGACAGCACA
CTGCTGACCTGGAGCACCGAGTAATCGTAGCGGTGGCTCTCGATCTGCTTGACGAAGGTGACGGGCTTCACGGAGTCAGCAGCGTCATCGACGATGAACG
TCACCTTGCCGCCGCGGTGCTGCGTTATGTTGACGTACCCTGCCATGCCGGGGGCAAACCCGGATCGCTG