Detailed information on CNT30523621


BLAST search results

BLAST vs Swiss-Prot:
sp|A2YWQ1|HSP81_ORYSI, E-value = 6e-81

BLAST vs NONCODE:
NONBNAT003938, E-value = 1e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695408Setaria italicaOryza sativa32.9253.6291.16215forward
CNT30402735Setaria italicaBeta vulgaris39.3618.8785.6257forward
CNT30631099Setaria italicaVigna unguiculata36.7538.7183.33240forward
CNT30554909Setaria italicaOryza glaberrima36.7562.3488.33240forward
CNT30154320Setaria italicaPrunus persica20.5236.3182.09134forward
CNT30704690Setaria italicaPrunus avium41.3513.2983.33270forward
CNT30103468Setaria italicaOryza rufipogon35.8344.7488.46234forward

Expression of CNT30523621

Peptides detected in this lncRNA

>peptide 1 (82 aa)
LIILEVEGHLGTPAKGLPRGITCDGEGATSLRLPHVLLIIVVLGGHNNSLSNKVGRVETNSKLTDHRHISTSSQSLHELLCS*

>peptide 2 (63 aa)
MNSFVPDRAMVPRLFTRSDLVIPIPLSMIVSVLEALSGTMWMNSSGWASSLLLSVKLSNLILSK

>peptide 3 (83 aa)
MNSFVPDRAMVPRLFTRSDLVIPIPLSMIVRVLEALSGTMWMNSSGWASSLLLSVGRVETNSKLTDHRHISTSSQSLHELLCS*

Sequence

>CNT30523621
CTGATCATCCTTGAGGTAGAGGGTCATCTTGGTACCCCTGCCAAGGGTCTCCCCAGAGGTATCACGTGTGACGGTGAAGGAGCCACCAGCCTGAGACTCC
CACACGTACTGCTCATCATCGTTGTGCTTGGTGGTCACAACAACTCTCTCAGCAACAAGGTAGGCAGAGTAGAAACCAACTCCAAACTGACCGATCATAG
ACACATCAGCACCAGCAGCCAGAGCCTCCATGAACTCCTTTGTTCCTGACCGTGCAATGGTACCAAGGTTGTTCACGAGATCTGACTTGGTCATACCAAT
ACCACTGTCAATGATTGTCAGAGTGTTGGAGGCCTTGTCAGGAACAATGTGGATGAACAGCTCTGGCTGGGCATCGAGCTTGCTCTTGTCCGTAGGCAGA
GTAGAAACCAACTCCAAACTGACCGATCATAGACACATCAGCACCAGCAGCCAGAGCCTCCATGAACTCCTTTGTTCCTGACCGTGCAATGGTACCAAGG
TTGTTCACGAGATCTGACTTGGTCATACCAATACCACTGTCAATGATTGTCAGTGTGTTGGAGGCCTTGTCAGGAACAATGTGGATGAACAGCTCTGGCT
GGGCATCGAGCTTGCTCTTGTCCGTCAAGCTCTCAAACCTGATCTTGTCCAAG