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Detailed information on CNT30523577


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616396Setaria italicaSesamum indicum34.8942.3580.09216forward
CNT30195835Setaria italicaPisum sativum28.4369.2980.68176forward
CNT30193210Setaria italicaSecale cereale27.6379.9185.38171forward
CNT30590617Setaria italicaMusa acuminata17.1225.4884.91106forward
CNT30554779Setaria italicaOryza glaberrima46.5330.882.99288forward
CNT30668234Setaria italicaTriticum dicoccoides56.3859.3585.39349forward
CNT30312316Setaria italicaCamelina sativa48.1479.6882.89298forward
CNT30468644Setaria italicaSaccharum spontaneum75.4449.6393.58467forward
CNT3016767Setaria italicaZea mays74.9661.3889.01464forward
CNT30688678Setaria italicaTriticum urartu56.3855.7585.39349forward
CNT30350934Setaria italicaEragrostis tef54.9392.6487.06340forward
CNT30366537Setaria italicaSorghum bicolor73.9952.5292.36458forward
CNT30410142Setaria italicaPapaver somniferum33.4431.4681.16207forward
CNT30574226Setaria italicaVitis vinifera49.2761.1280305forward
CNT3051605Setaria italicaAmborella trichopoda23.5922.0282.88146forward
CNT30150023Setaria italicaBrachypodium distachyon46.238.1386.36286forward
CNT30584421Setaria italicaEchinochloa crusgalli81.7462.7888.54506forward
CNT30497803Setaria italicaDigitaria exilis10086.0991.92619forward
CNT30176441Setaria italicaVigna angularis21.9722.4883.82136forward
CNT30558075Setaria italicaPanicum hallii81.7464.1386.96506forward

Expression of CNT30523577

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLGCNLEMWASMMDWWASKLDWLGNNSGL*

>peptide 2 (32 aa)
ERSDCMESSLDCLESKHAKGCIWLMKDCSSEK*

>peptide 3 (34 aa)
MMDCIPPMMESSHLVTGMVRTPCAQHMVRMKHLC*

Sequence

>CNT30523577
GAGAGGTCTGACTGTATGGAGTCATCCTTGGACTGCTTGGAGAGTAAGCATGCGAAGGGCTGTATTTGGCTGATGAAGGATTGTAGCTCGGAGAAGTAGG
ACTGTAGCTCGGAGATGTCGGGCTGTAACTTGGTGATGTTGGGCTGTATCCAGGCGAGGTAGGGCTGTATGCAGGAGAGGTAGGGCTATATGCCGGCGAG
GTTGGACTATAAACCGGCGAGGTGGGGCTGTAGCTTGGTGATGTAGGACTATAGCTAGGAGATGTAGGGCTGTAGCTTGGTGATGTAGGACTGTAGCTAG
GAGATGTTGGGCTGTAACTTGGAGATGTGGGCGAGTATGATGGACTGGTGGGCGAGTAAGTTGGACTGGTTGGGGAATAATTCGGGCTTGTAGGACTGTA
AGTGGGAGAGCCAGGTGTATATGATGGTGAGGTGGGACTATAGCTTGGTGAAGCAGGGCTGTATGATGGAGAAAGGGGGCTATATCCTTTTTCTGGGGTG
AAAACTGGCGATGATGGACTGTATCCCCCCGATGATGGAGAGTAGCCACCTGGTGACGGGAATGGTGAGAACGCCATGTGCCCAACATATGGTGAGAATG
AAGCATCTGTGTTAATGGG