Detailed information on CNT30523568


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 3e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Setaria italicaOryza sativa36.4737.7693.49384forward
CNT30300839Setaria italicaTriticum aestivum35.5235.0593.32374forward
CNT30370931Setaria italicaOryza glumipatula36.4722.2593.75384forward
CNT30117373Setaria italicaOryza nivara36.4724.5493.75384forward
CNT30604463Setaria italicaOryza punctata36.1832.4892.39381forward

Expression of CNT30523568

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MYVLLSPSAHQIGDHSPSTQPEKVWMMVLCHGSDRCCSRLSKGPLPVTLCWIRNPRNASMASLPA*

>peptide 2 (66 aa)
PLSLMYIPITPQYSLSSPCIQHYYNTVLNLLSGLNTHHKLMIHTERNSHRSRINVCPPVPISPPNW*

>peptide 3 (38 aa)
MVSKHLKLPADGDRVVTGSDATHRWRAPSPWPRAWARS*

>peptide 4 (82 aa)
MNSMTNSVDDDAKYSDLPASYHCGALMSPALVSTSGISIPATPSIAHRPFTSSACTNHRRFSGSSARRGKGGRGATRPWPPP*

Sequence

>CNT30523568
CACCCTTGTCATTAATGTACATACCAATCACCCCTCAGTACTCACTCTCCTCACCATGCATACAGCATTATTACAACACAGTCCTTAATCTCCTCTCCGG
ATTAAACACACATCACAAACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTATCAATGTATGTCCTCCTGTCCCCATCAGCCCACCAAATTGG
TGATCACTCCCCGTCGACTCAACCGGAGAAAGTCTGGATGATGGTGTTGTGCCATGGGTCGGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTGCCG
GTGACGTTGTGCTGGATCAGGAACCCCAGGAACGCCAGCATGGCCAGCCTCCCTGCATGAACAGGCACATCACATCCGGATATGGTTAGTAAACATTTAA
AGTTGCCGGCGGACGGCGACCGTGTAGTCACGGGATCAGACGCTACTCACCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGCGTGGGCGCGAAGTTGAGC
GGGTTGAAGACGCTGCCGGGGTATCCGCACTCGTGGGGCGGCAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCTGCCGGGGTTCTTGATGTCCT
GCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGACGAACAGCGTGGACGACGACGCGAAGTACTCCGACTTGCCGGCGTCGTACCACTG
CGGCGCGTTGATGAGCCCGGCCTTGGTCAGCACCTCCGGGATCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACG
AACCACCGCAGGTTCTCCGGGTCCTCCGCCAGGCGGGGGAAGGGAGGCCGGGGAGCCACTCGCCCTTGGCCTCCGCCCTGAGGCTGCGCCTCGTCGGCGC
AGCGGCGCGGCCGAGGCGGCTAGAGTGGCCGACGAAGGCCGACGACCTGAGCGACGCCGACGGGCGCAGGGCCGCGACCGGGGTGCGGGCGGTGACGGAC
GCCATGCTTCGCGGTGAGATGGGAGTGGCAGAGGAATGGAGAGGAAGAGCACG